BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0250500 Os05g0250500|Os05g0250500
         (111 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31360.1  | chr4:15221945-15223310 FORWARD LENGTH=187           97   2e-21
AT2G24440.1  | chr2:10391124-10392492 FORWARD LENGTH=184           91   1e-19

>AT4G31360.1 | chr4:15221945-15223310 FORWARD LENGTH=187
          Length = 186

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 54/74 (72%), Gaps = 6/74 (8%)

Query: 44  QCRQFKIRAVKVKEDLESFVPGVSV------PRRGCLEIREEGGEVFISLLNMPRPFTAM 97
           QC  FK RA++VKE LE  VPGV+V      PRRGC EIREEGG+ FISLL M RPF  M
Sbjct: 110 QCNAFKTRAIQVKEALEGAVPGVTVSLNPEKPRRGCFEIREEGGQTFISLLEMKRPFAPM 169

Query: 98  KKLDMDEVIKDIAK 111
           K LDM+EVI+DI K
Sbjct: 170 KALDMEEVIEDIIK 183



>AT2G24440.1 | chr2:10391124-10392492 FORWARD LENGTH=184
          Length = 183

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 53/72 (73%), Gaps = 6/72 (8%)

Query: 44  QCRQFKIRAVKVKEDLESFVPGVSV------PRRGCLEIREEGGEVFISLLNMPRPFTAM 97
           QC+ FK RA +VKE LE  VPG+ V      PRRGC EIREEGGE FISLL M RPFT M
Sbjct: 107 QCKSFKERANEVKEGLEEAVPGIIVTVNPDKPRRGCFEIREEGGETFISLLAMKRPFTPM 166

Query: 98  KKLDMDEVIKDI 109
           K+L+M+EVI DI
Sbjct: 167 KELNMEEVIADI 178



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,056,372
Number of extensions: 63998
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)