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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0247800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 18 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0194) R2 : 0.326
β1 : -0.166 (0.071) R2dD : 0.00946 R2D : -0.0124
β2 : -- (--) R2dC : -- R2C : --
β3 : -9.34 (2.35) R2dE : 1.28 R2E : -2.47
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -42.3 (7.21) R2dD*E : 2.78 R2D*E : -0.96
γ1 : 0.0612 (0.039) R2dN8 : 0.00489 R2N8 : -0.00649
σ : 0.341
deviance : 53.7
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.661
memory length : 89
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.06 0.342 2.9 -0.153 0.098 -9.03 -0.163 -41.6 0.0614 9.1 7.6 89 18 1.25
79.64 0.416 2.95 -0.185 0.0926 -0.0952 -0.148 -- 0.0429 15.8 7.849 17 19.7 0.238
53.14 0.34 2.9 -0.163 0.0977 -9.1 -- -41.7 0.0614 9.48 7.61 90 18 1.21
78.95 0.414 2.94 -0.102 0.0548 -0.0777 -- -- 0.0395 11.3 8.533 4 20 0.0547
53.7 0.341 2.9 -0.166 -- -9.34 -- -42.3 0.0612 -- 7.661 89 18 1.12
78.94 0.417 2.94 -0.107 0.0572 -- 0.0701 -- 0.0395 10.5 -- -- -- --
78.95 0.416 2.94 -0.104 0.0568 -- -- -- 0.0398 10.9 -- -- -- --
79.07 0.414 2.94 -0.103 -- -0.083 -- -- 0.0366 -- 8.425 1804 20 0.167
79.24 0.415 2.94 -- 0.0574 -0.0553 -- -- 0.0513 11 8.69 4 20 0.0397
79.15 0.416 2.94 -0.106 -- -- -- -- 0.0395 -- -- -- -- --
79.24 0.416 2.94 -- 0.0577 -- -- -- 0.0515 11 -- -- -- --
79.33 0.415 2.94 -- -- -0.0622 -- -- 0.0445 -- 8.505 3470 20.1 1.09
79.45 0.416 2.94 -- -- -- -- -- 0.0512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.64 wind 7 90 > th dose dependent rect. 18 1
2 57.33 wind 7 90 > th dose independent rect. 18 1
3 57.45 radiation 1 90 > th dose dependent rect. 18 1
17 61.96 wind 9 270 > th dose dependent rect. 17 9
25 61.97 wind 9 270 > th dose dependent rect. 17 5
47 62.75 wind 5 10 > th dose independent rect. 20 1
49 63.07 wind 9 270 > th dose dependent sin 13 NA
51 63.28 wind 9 270 > th dose dependent rect. 14 9
70 63.29 wind 9 270 > th dose dependent rect. 14 5
82 63.78 wind 9 270 > th dose independent rect. 17 9
90 63.79 wind 9 270 > th dose independent rect. 17 6
145 64.08 radiation 1 90 > th dose independent rect. 18 1
155 64.10 wind 9 270 > th dose dependent rect. 12 14
163 64.11 wind 9 270 > th dose dependent rect. 12 9
180 64.12 wind 9 270 > th dose independent sin 13 NA
192 64.68 wind 9 270 > th dose independent rect. 12 14
223 65.07 wind 9 270 < th dose independent sin 13 NA
330 69.73 atmosphere 1005 30 > th dose dependent rect. 19 1
377 71.12 humidity 80 10 < th dose independent rect. 20 1
441 72.31 atmosphere 1005 30 > th dose independent rect. 19 1
468 72.57 humidity 70 270 < th dose independent rect. 16 1
519 72.90 wind 9 30 > th dose dependent rect. 11 1
554 73.05 humidity 90 10 < th dose dependent rect. 19 1
569 73.18 humidity 60 43200 > th dose independent rect. 21 1
573 73.20 humidity 60 43200 < th dose independent rect. 20 2
582 73.30 humidity 60 43200 > th dose independent rect. 20 3
587 73.35 wind 9 30 > th dose independent rect. 11 1
602 73.43 wind 9 30 > th dose dependent rect. 18 18
611 73.45 humidity 70 43200 < th dose dependent rect. 21 2
680 73.68 wind 9 30 > th dose dependent sin 6 NA
820 74.07 wind 9 30 < th dose independent sin 5 NA
915 74.29 temperature 25 10 < th dose independent rect. 18 2
967 74.35 wind 9 30 > th dose independent rect. 18 18
981 74.40 wind 9 30 > th dose independent sin 5 NA