BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0247800 Os05g0247800|AK073843
         (293 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            160   7e-40

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 153/275 (55%), Gaps = 18/275 (6%)

Query: 31  GDTVIIWGRNKDEGSLREACDAGRYTTVIISFLSAFGYIPGTYKLDISGHQVSAV----- 85
           G   I WG+N +EG+L   C  GRY  V ++FL  FG    T +L+++GH   A      
Sbjct: 30  GGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGN-GQTPELNLAGHCNPAANTCTH 88

Query: 86  -GPDIKYCQSKGKLILLAIGGQGGEYSLPSSQAAVDLHDHLWYSYLGGRRNGVYRPFGDA 144
            G  +K CQS+G  ++L++GG  G YS+ S + A  + D+LW ++LGG+ +   RP GDA
Sbjct: 89  FGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSS--RPLGDA 146

Query: 145 NVNGIDFFIDQGAREHYNELAKMLYDHNKDYRATVGVMVTATTRCGYPDHRLDEALATGL 204
            ++GIDF I+ G+ +H+++LA+ L   +   R    + +T   +C +PD  +  AL T  
Sbjct: 147 VLDGIDFNIELGSPQHWDDLARTLSKFSHRGRK---IYLTGAPQCPFPDRLMGSALNTKR 203

Query: 205 FHRIHVKMFSDGRCPAWSRR-----QSFEKWAKTYPQSRVLIGVVASPDVDKDAYMPPEA 259
           F  + ++ +++  C   S        S+ KW  +    +  +G+ A+P+     Y+PP+ 
Sbjct: 204 FDYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDV 263

Query: 260 LNN-LLQFINKQPNFGGVMVWDRFYDKKTGFTAHL 293
           L + +L  + K   +GGVM+W +F+D K G+++ +
Sbjct: 264 LTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSSI 298



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,486,078
Number of extensions: 280728
Number of successful extensions: 483
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)