Os05g0247500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 18 protein.
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Os05g0247500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 18 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 299.14 | 0.813 | 4.64 | -1.54 | 0.452 | 1.22 | -0.514 | 3.4 | 0.0361 | 15.9 | 19.19 | 4524 | -- | -- |
| 309.69 | 0.826 | 4.52 | -1.36 | 0.516 | 0.247 | -0.595 | -- | 0.0923 | 15.5 | 21.8 | 4718 | -- | -- |
| 298.29 | 0.804 | 4.65 | -1.4 | 0.447 | 1.44 | -- | 3.67 | 0.108 | 16 | 19.02 | 5885 | -- | -- |
| 310.68 | 0.826 | 4.53 | -1.38 | 0.516 | 0.234 | -- | -- | 0.0856 | 15.8 | 21.7 | 4773 | -- | -- |
| 308.93 | 0.819 | 4.67 | -1.48 | -- | 1.49 | -- | 3.94 | 0.0475 | -- | 19.16 | 5880 | -- | -- |
| 312.99 | 0.829 | 4.54 | -1.44 | 0.46 | -- | -0.506 | -- | 0.0255 | 15.9 | -- | -- | -- | -- |
| 313.59 | 0.829 | 4.54 | -1.44 | 0.464 | -- | -- | -- | 0.0227 | 16.3 | -- | -- | -- | -- |
| 320.58 | 0.834 | 4.51 | -1.32 | -- | 0.365 | -- | -- | 0.134 | -- | 22.1 | 1463 | -- | -- |
| 313.3 | 0.824 | 4.43 | -- | 0.448 | 1.11 | -- | -- | 0.545 | 16.5 | 21.1 | 47520 | -- | -- |
| 325.2 | 0.843 | 4.54 | -1.46 | -- | -- | -- | -- | 0.0104 | -- | -- | -- | -- | -- |
| 368.57 | 0.898 | 4.51 | -- | 0.492 | -- | -- | -- | 0.184 | 16.3 | -- | -- | -- | -- |
| 324.08 | 0.838 | 4.42 | -- | -- | 1.13 | -- | -- | 0.542 | -- | 21.08 | 47520 | -- | -- |
| 381.63 | 0.912 | 4.5 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 292.98 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 5 | 293.91 | wind | 9 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 10 | 295.08 | humidity | 50 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 12 | 295.31 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 14 | 295.67 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 19 | 295.90 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 20 | 296.08 | humidity | 50 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 21 | 296.28 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 22 | 296.37 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 24 | 296.41 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 26 | 296.49 | wind | 3 | 14400 | < th | dose dependent | rect. | 7 | 6 |
| 27 | 296.54 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 29 | 296.60 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 17 |
| 31 | 296.62 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 18 |
| 34 | 296.66 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 36 | 296.67 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 50 | 296.78 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 55 | 296.86 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 57 | 296.91 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 61 | 296.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 71 | 297.00 | humidity | 50 | 4320 | > th | dose independent | rect. | 22 | 12 |
| 73 | 297.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 103 | 297.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 106 | 297.37 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 3 | 6 |
| 125 | 297.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 133 | 297.56 | wind | 9 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 143 | 297.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 145 | 297.65 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 146 | 297.65 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 147 | 297.65 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 149 | 297.68 | wind | 3 | 14400 | < th | dose dependent | sin | 4 | NA |
| 171 | 297.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 176 | 297.84 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 180 | 297.85 | wind | 1 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 198 | 297.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 203 | 297.94 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 16 |
| 205 | 297.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 223 | 298.00 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 236 | 298.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 269 | 298.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 281 | 298.21 | wind | 3 | 14400 | < th | dose independent | sin | 11 | NA |
| 312 | 298.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 322 | 298.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 323 | 298.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 340 | 298.33 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 354 | 298.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 367 | 298.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 384 | 298.43 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 391 | 298.45 | wind | 3 | 14400 | < th | dose independent | sin | 6 | NA |
| 482 | 298.66 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 491 | 298.68 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 500 | 298.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 509 | 298.73 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 6 |
| 535 | 298.78 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 572 | 298.84 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 584 | 298.86 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 595 | 298.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 598 | 298.89 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 599 | 298.89 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 618 | 298.92 | wind | 3 | 14400 | > th | dose independent | sin | 11 | NA |
| 627 | 298.93 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 656 | 298.98 | temperature | 20 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 667 | 298.99 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 679 | 299.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 684 | 299.01 | wind | 5 | 30 | < th | dose independent | rect. | 6 | 10 |
| 698 | 299.03 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 747 | 299.11 | wind | 3 | 14400 | > th | dose independent | sin | 6 | NA |
| 818 | 299.21 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 869 | 299.29 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 872 | 299.30 | humidity | 50 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 945 | 299.40 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 948 | 299.40 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 10 |
| 953 | 299.41 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |