BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0247500 Os05g0247500|006-068-A10
         (293 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            179   1e-45

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 155/270 (57%), Gaps = 17/270 (6%)

Query: 33  SSIGDTVVFWGRNKAEGSLREACDTGLYNTVIISFLSAFGRG-SYKLDLSGH------PV 85
           +S G   ++WG+N  EG+L   C TG Y  V ++FL  FG G + +L+L+GH        
Sbjct: 27  ASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTC 86

Query: 86  VPVGGDIKYCQSKGKTVLLAIGGQGGEYYLPSSQAAADLDDYLWNAFLGGGRSGVARPFG 145
              G  +K CQS+G  V+L++GG  G Y + S + A  + DYLWN FLGG  S  +RP G
Sbjct: 87  THFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSS--SRPLG 144

Query: 146 DAVVNGIDFFIDQGATEHYDELARLLHGHSNGG--VMLTATARCVFPDQRQQAALATGLF 203
           DAV++GIDF I+ G+ +H+D+LAR L   S+ G  + LT   +C FPD+   +AL T  F
Sbjct: 145 DAVLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFPDRLMGSALNTKRF 204

Query: 204 SRIHVKLFNDGRCTW--GRRESL----EKWAAAYPDSRIYVSIVASPEADRDAYMSHKDL 257
             + ++ +N+  C++  G  ++L     KW  +    + ++ + A+PEA    Y+    L
Sbjct: 205 DYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVL 264

Query: 258 YFDVLQFINKLPNYGGIMVWNRYWDKKTGY 287
              +L  + K   YGG+M+W+++WD K GY
Sbjct: 265 TSQILPTLKKSRKYGGVMLWSKFWDDKNGY 294



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,250,148
Number of extensions: 272186
Number of successful extensions: 502
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)