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Os05g0247100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chitinase (EC 3.2.1.14) III C00481-rice (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0471) R2 : 0.774
β1 : -4.88 (0.21) R2dD : 0.434 R2D : 0.546
β2 : 0.07 (0.115) R2dC : 0.000198 R2C : -0.0187
β3 : -1.62 (0.147) R2dE : 0.099 R2E : 0.306
β4 : -2.64 (0.45) R2dD*C : 0.0179 R2D*C : -0.0183
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.14 (0.103) R2dN8 : 0.0956 R2N8 : 0.0315
σ : 0.873
deviance : 351.71
__
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C
peak time of C : 21.8
E
wheather : temperature
threshold : 25.41
memory length : 5490
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.5
open length of G : 1.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.79 0.882 11.3 -4.86 0.0934 -1.65 -2.72 0.492 -1.15 21.8 25.2 5490 10.3 2.18
351.71 0.873 11.3 -4.88 0.07 -1.62 -2.64 -- -1.14 21.8 25.41 5490 10.5 1.63
380.45 0.908 11.3 -4.82 0.0841 -1.65 -- 0.239 -1.17 21.8 25.23 5489 10.3 1.87
378.46 0.906 11.3 -4.81 0.109 -1.68 -- -- -1.23 21.6 25.4 5473 10.6 1.72
380.92 0.909 11.3 -4.8 -- -1.67 -- 0.224 -1.16 -- 25.24 5492 10.3 1.85
443.84 0.988 11.4 -6.34 0.113 -- 2.89 -- -1.54 9.96 -- -- -- --
476.22 1.02 11.4 -6.23 0.105 -- -- -- -1.53 8.98 -- -- -- --
379.16 0.907 11.3 -4.81 -- -1.68 -- -- -1.23 -- 25.4 5480 10.6 1.68
476.03 1.02 10.9 -- 0.0539 -4.95 -- -- 0.495 8.9 21.7 47520 10.8 0.0152
476.85 1.02 11.4 -6.23 -- -- -- -- -1.53 -- -- -- -- --
1498.2 1.81 11.2 -- 0.156 -- -- -- -0.837 12.4 -- -- -- --
476.13 1.02 10.9 -- -- -4.95 -- -- 0.479 -- 21.73 47520 10.8 0.0167
1499.73 1.81 11.2 -- -- -- -- -- -0.839 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 346.74 wind 1 43200 < th dose dependent rect. 22 5
2 348.46 wind 1 43200 < th dose independent rect. 20 7
5 349.30 wind 1 43200 < th dose dependent rect. 18 10
8 350.42 wind 1 43200 < th dose dependent rect. 21 7
10 350.97 wind 1 43200 < th dose independent rect. 19 9
11 350.99 wind 1 43200 < th dose dependent sin 14 NA
16 352.14 wind 1 43200 > th dose independent rect. 18 10
18 352.28 wind 1 43200 > th dose independent rect. 20 8
26 353.96 wind 1 43200 < th dose dependent rect. 14 14
36 355.04 wind 1 43200 > th dose independent rect. 22 5
37 355.14 radiation 1 14400 < th dose dependent rect. 4 1
58 359.66 humidity 60 43200 < th dose independent rect. 23 13
64 359.89 temperature 20 14400 < th dose dependent rect. 23 1
68 360.13 humidity 60 43200 < th dose independent rect. 8 4
72 360.22 radiation 1 43200 < th dose dependent rect. 20 9
75 360.32 radiation 1 1440 < th dose dependent rect. 20 9
77 360.48 humidity 60 43200 > th dose independent rect. 1 11
79 360.50 radiation 1 43200 < th dose dependent rect. 23 6
92 360.91 temperature 25 4320 > th dose independent rect. 10 2
96 361.17 humidity 60 43200 > th dose independent rect. 8 4
110 362.28 radiation 10 43200 < th dose dependent rect. 18 13
111 362.35 humidity 60 43200 > th dose independent rect. 9 2
122 362.58 temperature 25 4320 < th dose independent rect. 10 2
132 363.15 radiation 10 43200 < th dose dependent rect. 17 15
152 363.61 radiation 30 43200 < th dose independent rect. 15 1
155 363.65 temperature 10 270 > th dose dependent rect. 21 21
169 364.33 radiation 30 43200 < th dose independent rect. 15 4
173 364.36 radiation 30 43200 < th dose independent rect. 15 7
174 364.36 radiation 30 43200 < th dose independent rect. 15 13
175 364.36 radiation 30 43200 < th dose independent rect. 15 15
202 364.62 radiation 20 43200 > th dose dependent rect. 15 1
203 364.76 radiation 1 43200 > th dose dependent rect. 15 16
206 364.91 radiation 20 43200 > th dose dependent rect. 15 16
235 365.27 radiation 40 43200 < th dose dependent rect. 15 16
347 366.34 radiation 10 43200 < th dose dependent sin 12 NA
357 366.51 temperature 20 4320 > th dose dependent rect. 2 1
359 366.53 temperature 25 4320 > th dose independent rect. 10 13
433 367.02 temperature 25 4320 < th dose independent rect. 9 14
437 367.05 radiation 10 43200 < th dose independent rect. 17 15
450 367.25 temperature 25 4320 > th dose independent rect. 10 10
458 367.29 radiation 40 43200 < th dose dependent rect. 5 1
459 367.30 radiation 10 43200 < th dose independent rect. 6 1
472 367.35 radiation 40 43200 < th dose dependent rect. 1 5
521 367.54 radiation 20 43200 > th dose independent rect. 16 16
544 367.68 radiation 40 43200 < th dose dependent rect. 21 9
558 367.73 radiation 10 43200 < th dose independent rect. 1 6
574 367.76 temperature 20 4320 > th dose dependent rect. 2 3
583 367.80 radiation 10 43200 < th dose independent rect. 19 12
627 367.93 temperature 20 4320 > th dose dependent rect. 22 8
643 368.06 radiation 40 43200 < th dose dependent rect. 15 3
649 368.10 temperature 20 4320 > th dose dependent rect. 4 1
658 368.17 wind 1 43200 < th dose dependent rect. 7 1
684 368.30 temperature 25 1440 < th dose independent rect. 17 6
686 368.30 wind 1 43200 < th dose dependent rect. 11 19
693 368.35 radiation 10 43200 < th dose independent sin 12 NA
695 368.36 radiation 20 43200 < th dose independent sin 14 NA
721 368.47 radiation 1 43200 > th dose dependent rect. 5 1
724 368.48 humidity 60 43200 < th dose independent sin 9 NA
733 368.51 temperature 20 14400 < th dose independent rect. 5 1
736 368.51 temperature 20 14400 < th dose dependent rect. 3 1
748 368.58 radiation 30 43200 < th dose dependent sin 13 NA
799 368.68 temperature 20 14400 > th dose independent rect. 1 2
886 368.81 temperature 25 1440 > th dose dependent rect. 6 6
888 368.83 temperature 20 14400 < th dose dependent sin 13 NA
904 368.89 temperature 25 4320 > th dose independent sin 21 NA
910 368.91 temperature 25 1440 > th dose independent rect. 17 6
912 368.91 temperature 20 4320 > th dose dependent rect. 22 1
913 368.91 humidity 60 43200 < th dose dependent rect. 10 1
919 368.96 temperature 20 14400 < th dose independent rect. 1 5
921 368.98 radiation 1 43200 > th dose dependent sin 13 NA
929 369.04 temperature 20 14400 > th dose independent rect. 1 4
940 369.08 temperature 20 14400 > th dose independent rect. 4 1
966 369.18 temperature 25 4320 < th dose independent sin 21 NA