BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0247100 Os05g0247100|AK062114
         (297 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            179   2e-45

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/277 (36%), Positives = 159/277 (57%), Gaps = 21/277 (7%)

Query: 23  STGDTVVFWGRNTDQLEGSLREACDTGLYTTVIISFLSAFGYIPGTYKLDISGH------ 76
           S G   ++WG+N +  EG+L   C TG Y  V ++FL  FG    T +L+++GH      
Sbjct: 28  SRGGIAIYWGQNGN--EGNLSATCATGRYAYVNVAFLVKFGN-GQTPELNLAGHCNPAAN 84

Query: 77  TVSAVGPDIKHCQSRGILVLLAIGGQGGEYSLPTSQAAVDLEDYLWNAFLGGGRPGVARP 136
           T +  G  +K CQSRGI V+L++GG  G YS+ + + A  + DYLWN FLGG     +RP
Sbjct: 85  TCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGG--KSSSRP 142

Query: 137 FGDAVVDGIDFFIDQGATEHYDELARRLYAHNKDYKGRLGVMLTATARCVFPDQRLQAAL 196
            GDAV+DGIDF I+ G+ +H+D+LAR L   +  ++GR  + LT   +C FPD+ + +AL
Sbjct: 143 LGDAVLDGIDFNIELGSPQHWDDLARTLSKFS--HRGR-KIYLTGAPQCPFPDRLMGSAL 199

Query: 197 STGLFSRIHVKVFGDGRCASRR-------EELEKWMAAYPQSRVLVGVVASPEADRDGYV 249
           +T  F  + ++ + +  C+          +   KW  +    +  +G+ A+PEA   GY+
Sbjct: 200 NTKRFDYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYI 259

Query: 250 SHKDLYYDVLQFINKLPNYGGIMVWNRYWDKKTGWTA 286
               L   +L  + K   YGG+M+W+++WD K G+++
Sbjct: 260 PPDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSS 296



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,479,802
Number of extensions: 281592
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)