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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0245300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF588 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0621) R2 : 0.205
β1 : -3.17 (0.379) R2dD : 0.513 R2D : -0.474
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.642 (0.173) R2dE : 0.0414 R2E : -0.0277
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.82 (0.81) R2dD*E : 0.628 R2D*E : -0.269
γ1 : -0.399 (0.159) R2dN8 : 0.0317 R2N8 : -0.0979
σ : 0.963
deviance : 427.84
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.049
memory length : 17016
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 0.923

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
421.22 0.964 3.98 -3.17 0.256 -0.622 0.936 7.83 -0.397 2.08 1.028 17019 5.01 0.951
492.9 1.03 3.93 -1.63 0.289 -1.54 0.835 -- -0.0897 4.08 0.3612 21949 6.1 1.05
423.83 0.959 3.99 -3.17 0.254 -0.647 -- 7.82 -0.404 2.17 1.049 17035 5.03 0.933
482.03 1.02 3.81 -1.59 0.22 -1.69 -- -- -0.00255 2.7 0.42 22032 6.36 0.7
427.84 0.963 3.98 -3.17 -- -0.642 -- 7.82 -0.399 -- 1.049 17016 5.03 0.923
510.13 1.06 3.67 -0.0351 0.255 -- 0.448 -- 0.536 2.7 -- -- -- --
510.37 1.06 3.67 -0.0467 0.279 -- -- -- 0.532 3.96 -- -- -- --
482.69 1.02 3.78 -1.51 -- -1.53 -- -- 0.0639 -- 0.3819 22019 6.37 0.418
498.82 1.04 3.74 -- 0.239 -0.581 -- -- 0.39 2.84 0.2522 16175 6.39 0.1
514.65 1.06 3.67 -0.0353 -- -- -- -- 0.539 -- -- -- -- --
510.43 1.06 3.67 -- 0.279 -- -- -- 0.537 3.96 -- -- -- --
498.94 1.04 3.7 -- -- -0.584 -- -- 0.448 -- 0.00301 16528 6.51 0.0333
514.68 1.06 3.67 -- -- -- -- -- 0.543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 416.18 radiation 10 43200 > th dose independent rect. 5 2
13 416.33 wind 1 43200 < th dose independent rect. 19 7
15 416.58 humidity 90 43200 < th dose independent rect. 20 4
16 416.88 humidity 90 43200 < th dose independent rect. 22 2
18 417.47 wind 1 43200 < th dose independent rect. 21 5
19 417.82 wind 1 43200 < th dose dependent rect. 16 10
22 418.49 wind 1 43200 > th dose independent rect. 19 7
23 418.89 temperature 30 43200 > th dose dependent rect. 14 1
26 419.02 humidity 90 43200 > th dose dependent rect. 5 1
30 419.23 wind 1 43200 < th dose dependent rect. 19 7
34 419.33 wind 1 43200 > th dose independent rect. 21 5
40 419.45 temperature 30 43200 > th dose dependent rect. 8 8
80 419.78 temperature 30 43200 > th dose dependent sin 4 NA
107 419.90 temperature 30 43200 > th dose independent rect. 8 8
136 419.96 temperature 30 43200 > th dose independent rect. 10 6
158 420.04 temperature 30 43200 > th dose independent rect. 12 4
178 420.07 temperature 30 43200 > th dose dependent rect. 11 22
180 420.08 temperature 30 43200 > th dose independent rect. 14 3
211 420.10 temperature 30 43200 > th dose independent rect. 14 1
213 420.10 temperature 30 43200 < th dose independent rect. 8 8
215 420.10 temperature 30 43200 < th dose independent rect. 4 12
217 420.10 temperature 30 43200 < th dose independent rect. 24 16
223 420.10 temperature 30 43200 > th dose dependent no NA NA
372 420.19 temperature 30 43200 < th dose independent rect. 10 6
382 420.27 temperature 30 43200 > th dose dependent rect. 14 23
387 420.31 temperature 30 43200 > th dose independent sin 2 NA
410 420.36 temperature 30 43200 < th dose independent rect. 12 5
445 420.40 temperature 30 43200 > th dose independent rect. 14 21
450 420.42 temperature 30 43200 > th dose independent rect. 12 23
452 420.43 temperature 30 43200 > th dose independent rect. 14 23
454 420.45 temperature 30 43200 < th dose independent rect. 14 3
458 420.46 temperature 30 43200 < th dose independent sin 2 NA
476 420.48 temperature 30 43200 < th dose independent rect. 14 21
482 420.50 temperature 30 43200 > th dose independent rect. 10 23
487 420.52 humidity 90 43200 > th dose independent rect. 20 4
488 420.52 temperature 30 43200 < th dose independent rect. 12 23
489 420.52 temperature 30 43200 < th dose independent rect. 14 23
491 420.53 temperature 30 43200 > th dose independent no NA NA
614 420.60 temperature 30 43200 < th dose independent rect. 10 23
656 420.63 temperature 30 43200 < th dose independent rect. 8 17
663 420.63 temperature 30 43200 < th dose independent rect. 5 20
670 420.63 temperature 30 43200 < th dose independent rect. 8 22
674 420.64 temperature 30 43200 < th dose independent no NA NA
769 420.72 temperature 30 43200 < th dose independent rect. 10 15
771 420.72 temperature 30 43200 < th dose independent rect. 10 20
859 420.95 humidity 90 43200 > th dose dependent rect. 1 9
860 420.96 temperature 30 43200 < th dose independent rect. 12 13
863 420.97 temperature 30 43200 < th dose independent rect. 12 11
964 421.21 wind 1 43200 < th dose dependent rect. 21 5
966 421.22 temperature 30 43200 > th dose independent rect. 10 1
969 421.24 temperature 30 43200 < th dose independent rect. 10 1
990 421.27 humidity 90 43200 > th dose dependent rect. 4 3