BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0245300 Os05g0245300|AB091471
(162 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03700.1 | chr1:921038-921844 FORWARD LENGTH=165 85 2e-17
AT4G03540.1 | chr4:1570042-1571483 FORWARD LENGTH=165 78 2e-15
AT4G25040.1 | chr4:12868320-12869319 FORWARD LENGTH=171 55 2e-08
>AT1G03700.1 | chr1:921038-921844 FORWARD LENGTH=165
Length = 164
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%)
Query: 5 HRLMNAVLRLXXXXXXXXXXVVMVTSRETTSFFGIQMEAKYSYTPSFIFFXXXXXXXXXX 64
RL VLR + M+TSRE +SFF I + AKYS +F +F
Sbjct: 6 QRLGGLVLRFAAFCAALGAVIAMITSRERSSFFVISLVAKYSDLAAFKYFVIANAIVTVY 65
Query: 65 XXXXXXXXXGSALSRLALTTXXXXXXXXXXXXXXXXXXXXXXKNGNSHAGWLPVCGQIHA 124
S L + + K GN++AGWLP+CGQ+
Sbjct: 66 SFLVLFLPKESLLWKFVVVLDLMVTMLLTSSLSAAVAVAQVGKRGNANAGWLPICGQVPR 125
Query: 125 YCNHVMAALIAGFVALAVHFVVVMYSLHIVTD 156
+C+ + ALIAG VAL ++ ++++S+H V D
Sbjct: 126 FCDQITGALIAGLVALVLYVFLLIFSIHHVVD 157
>AT4G03540.1 | chr4:1570042-1571483 FORWARD LENGTH=165
Length = 164
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%)
Query: 25 VVMVTSRETTSFFGIQMEAKYSYTPSFIFFXXXXXXXXXXXXXXXXXXXGSALSRLALTT 84
+VM+TSRE SF I +EAKY+ +F +F S L + +
Sbjct: 26 IVMITSRERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVL 85
Query: 85 XXXXXXXXXXXXXXXXXXXXXXKNGNSHAGWLPVCGQIHAYCNHVMAALIAGFVALAVHF 144
K GN++AGWLP+CGQ+ +C+ + ALIAGFVAL ++
Sbjct: 86 DLVMTMLLTSSLSAALAVAQVGKKGNANAGWLPICGQVPKFCDQITGALIAGFVALVLYV 145
Query: 145 VVVMYSLHIVTD 156
++++YSLH V D
Sbjct: 146 LLLLYSLHAVVD 157
>AT4G25040.1 | chr4:12868320-12869319 FORWARD LENGTH=171
Length = 170
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 26 VMVTSRETTSFFGIQMEAKYSYTPSFIFFXXXXXXXXXXXXXXXXXXXGSALSRLALTTX 85
VM+T+RE S +GI EAKYSY+ +F + A+ R L
Sbjct: 35 VMITNREVASVYGIAFEAKYSYSSAFRYLVYAQIAVCAATLFTLVWAC-LAVRRRGLVFA 93
Query: 86 X-----XXXXXXXXXXXXXXXXXXXXKNGNSHAGWLPVCGQIHAYCNHVMAALIAGFVAL 140
K GN AGWLP+CG +H YC+ V +L F +
Sbjct: 94 LFFFDLLTTLTAISAFSAAFAEGYVGKYGNKQAGWLPICGYVHGYCSRVTISLAMSFASF 153
Query: 141 AVHFVV 146
+ F++
Sbjct: 154 ILLFIL 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,877,852
Number of extensions: 39785
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 107 (45.8 bits)