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Os05g0244500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 5 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.39 (0.0299) R2 : 0.704
β1 : -2.11 (0.112) R2dD : 0.253 R2D : 0.248
β2 : 1.4 (0.08) R2dC : 0.212 R2C : 0.078
β3 : -1.21 (0.0701) R2dE : 0.209 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.93 (0.343) R2dD*E : 0.0501 R2D*E : 0.0783
γ1 : -0.672 (0.0639) R2dN8 : 0.0987 R2N8 : 0.0327
σ : 0.557
deviance : 143.02
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_____
C
peak time of C : 5.54
E
wheather : temperature
threshold : 20.68
memory length : 11
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.9
open length of G : 6.28

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.22 0.556 8.4 -2.11 1.4 -1.18 -1.25 3.03 -0.681 5.66 20.65 10 21.9 6.27
159.1 0.587 8.42 -2.29 1.43 -1.21 -0.742 -- -0.69 5.7 20.79 10 22 6.08
143.02 0.557 8.39 -2.11 1.4 -1.21 -- 2.93 -0.672 5.54 20.68 11 21.9 6.28
158.6 0.587 8.42 -2.31 1.34 -1.26 -- -- -0.692 5.47 20.78 10 21.9 6.02
229.61 0.706 8.4 -2.1 -- -1.07 -- 2.71 -0.58 -- 20.7 26 21.7 5.97
213.06 0.684 8.42 -2.36 1.31 -- -1.62 -- -0.773 7.86 -- -- -- --
220.6 0.696 8.42 -2.41 1.31 -- -- -- -0.772 7.74 -- -- -- --
244.67 0.729 8.42 -2.28 -- -1.05 -- -- -0.638 -- 20.7 16 21.7 5.93
304.48 0.813 8.36 -- 1.48 -1.29 -- -- -0.516 5.27 19.32 31 21.8 6.39
313.25 0.827 8.45 -2.39 -- -- -- -- -0.753 -- -- -- -- --
373.53 0.904 8.36 -- 1.29 -- -- -- -0.504 7.87 -- -- -- --
339.32 0.858 8.37 -- -- -1.52 -- -- -0.613 -- 18.7 21722 21.9 6
464.2 1.01 8.39 -- -- -- -- -- -0.488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.81 temperature 20.0 10 > th dose independent rect. 22 6
2 146.10 temperature 20.0 270 > th dose independent rect. 20 6
6 147.60 temperature 20.0 270 > th dose independent rect. 21 4
7 147.70 temperature 15.0 270 > th dose dependent rect. 20 6
17 149.91 temperature 20.0 90 > th dose independent rect. 9 18
20 151.02 temperature 20.0 270 > th dose independent rect. 7 19
21 151.22 temperature 20.0 10 > th dose independent rect. 9 19
48 154.15 temperature 10.0 270 > th dose dependent rect. 20 15
54 154.87 temperature 15.0 10 > th dose dependent rect. 21 7
63 155.91 temperature 20.0 270 > th dose independent rect. 20 16
66 156.37 temperature 20.0 90 > th dose independent rect. 22 15
87 157.67 temperature 20.0 270 > th dose dependent rect. 22 2
128 159.65 temperature 20.0 10 > th dose independent rect. 22 15
140 160.65 temperature 10.0 90 > th dose dependent rect. 9 18
148 161.12 wind 1.0 14400 < th dose independent rect. 22 4
152 161.29 temperature 10.0 43200 > th dose independent rect. 10 5
155 161.43 wind 1.0 270 > th dose independent rect. 1 6
168 161.88 atmosphere 1000.0 270 > th dose dependent rect. 3 3
172 162.05 wind 9.0 43200 > th dose dependent rect. 21 2
176 162.17 wind 7.0 43200 > th dose dependent rect. 1 1
182 162.38 atmosphere 1000.0 90 > th dose dependent rect. 3 5
188 162.56 wind 7.0 43200 > th dose independent rect. 1 1
190 162.57 wind 1.0 270 > th dose independent rect. 3 2
191 162.59 temperature 10.0 10 > th dose dependent rect. 9 18
192 162.60 wind 7.0 43200 > th dose dependent rect. 21 6
195 162.67 atmosphere 1000.0 90 > th dose independent rect. 9 18
199 162.76 wind 9.0 43200 > th dose independent rect. 22 1
206 162.87 wind 7.0 43200 > th dose independent rect. 21 6
209 163.00 wind 5.0 90 < th dose independent rect. 3 6
211 163.02 radiation 1.0 270 < th dose independent rect. 3 7
222 163.26 wind 1.0 14400 < th dose dependent rect. 22 4
226 163.36 wind 7.0 43200 < th dose independent rect. 21 6
228 163.39 radiation 1.0 270 < th dose dependent rect. 3 7
229 163.40 wind 9.0 43200 < th dose independent rect. 21 2
232 163.47 wind 7.0 43200 < th dose independent rect. 1 1
241 163.66 wind 5.0 270 < th dose independent rect. 3 2
246 163.69 radiation 1.0 270 < th dose independent rect. 3 4
248 163.71 wind 5.0 270 < th dose independent rect. 1 6
254 163.79 wind 1.0 270 > th dose independent rect. 2 4
287 164.40 radiation 20.0 1440 < th dose independent rect. 11 2
300 164.58 atmosphere 1000.0 270 > th dose dependent rect. 1 6
303 164.69 wind 1.0 43200 > th dose independent rect. 16 10
306 164.71 radiation 1.0 270 < th dose dependent rect. 3 2
308 164.75 atmosphere 1000.0 10 > th dose dependent rect. 3 6
309 164.76 humidity 80.0 43200 > th dose independent rect. 4 7
310 164.76 wind 1.0 43200 < th dose dependent rect. 10 17
324 164.95 atmosphere 995.0 270 > th dose independent rect. 6 21
330 165.00 precipitation 0.1 90 < th dose independent rect. 3 6
332 165.00 precipitation 0.1 90 < th dose dependent rect. 3 6
338 165.06 atmosphere 1015.0 90 < th dose independent rect. 9 18
349 165.17 wind 1.0 43200 > th dose independent rect. 14 12
353 165.21 wind 9.0 90 < th dose independent rect. 9 18
363 165.37 precipitation 0.1 270 < th dose independent rect. 3 3
365 165.37 precipitation 0.1 270 < th dose dependent rect. 3 3
368 165.40 temperature 10.0 270 > th dose independent rect. 3 3
370 165.40 temperature 30.0 270 < th dose independent rect. 3 3
371 165.40 humidity 50.0 270 > th dose independent rect. 3 3
374 165.40 atmosphere 995.0 270 > th dose independent rect. 3 3
375 165.40 atmosphere 1015.0 270 < th dose independent rect. 3 3
376 165.40 radiation 20.0 270 < th dose independent rect. 3 3
379 165.40 temperature 10.0 270 > th dose independent rect. 6 21
397 165.45 temperature 10.0 90 > th dose independent rect. 3 6
399 165.45 humidity 50.0 90 > th dose independent rect. 3 6
400 165.45 atmosphere 995.0 90 > th dose independent rect. 3 6
401 165.45 atmosphere 1015.0 90 < th dose independent rect. 3 6
404 165.46 radiation 40.0 270 < th dose dependent rect. 3 2
413 165.55 atmosphere 1015.0 270 < th dose independent rect. 7 18
419 165.61 precipitation 0.1 90 < th dose independent rect. 9 18
420 165.61 precipitation 0.1 90 < th dose dependent rect. 9 18
422 165.64 wind 9.0 270 < th dose independent rect. 6 21
429 165.72 precipitation 0.1 43200 > th dose independent rect. 10 3
431 165.72 precipitation 0.1 43200 > th dose dependent rect. 10 3
442 165.80 humidity 80.0 43200 > th dose independent rect. 5 5
445 165.85 radiation 40.0 270 < th dose dependent rect. 2 5
449 165.91 temperature 30.0 90 < th dose independent rect. 3 6
452 165.92 wind 1.0 43200 < th dose independent rect. 16 10
457 165.98 wind 1.0 43200 < th dose independent rect. 14 12
473 166.06 radiation 40.0 270 < th dose independent rect. 2 5
485 166.15 humidity 80.0 43200 > th dose independent rect. 2 10
487 166.18 wind 9.0 270 < th dose independent rect. 7 19
489 166.22 radiation 20.0 43200 > th dose independent rect. 13 1
516 166.42 humidity 80.0 43200 < th dose independent rect. 2 10
532 166.54 precipitation 0.1 43200 > th dose independent rect. 8 5
533 166.54 precipitation 0.1 43200 > th dose dependent rect. 8 5
546 166.56 wind 1.0 14400 < th dose dependent rect. 21 7
555 166.63 wind 7.0 43200 < th dose independent rect. 21 12
556 166.63 atmosphere 995.0 43200 > th dose independent rect. 19 18
557 166.63 precipitation 0.1 270 < th dose independent rect. 7 19
558 166.63 wind 9.0 90 < th dose dependent rect. 3 6
559 166.63 precipitation 0.1 270 < th dose dependent rect. 7 19
560 166.64 humidity 70.0 43200 > th dose independent rect. 18 1
562 166.65 atmosphere 995.0 43200 > th dose independent rect. 5 3
564 166.65 precipitation 0.1 270 < th dose independent rect. 6 21
566 166.65 precipitation 0.1 270 < th dose dependent rect. 6 21
574 166.70 humidity 60.0 43200 > th dose dependent rect. 3 8
592 166.83 humidity 90.0 43200 > th dose independent rect. 12 1
604 166.89 wind 1.0 14400 < th dose dependent rect. 16 12
627 166.97 wind 7.0 43200 > th dose independent rect. 21 12
631 166.99 humidity 80.0 43200 < th dose independent rect. 4 7
634 167.01 atmosphere 995.0 43200 < th dose independent sin 7 NA
639 167.02 atmosphere 995.0 43200 > th dose independent sin 7 NA
646 167.10 atmosphere 995.0 43200 > th dose independent rect. 4 5
654 167.18 wind 1.0 43200 < th dose dependent rect. 7 20
655 167.19 humidity 80.0 43200 < th dose independent rect. 18 19
674 167.34 humidity 70.0 43200 > th dose independent rect. 17 17
683 167.41 precipitation 0.1 43200 < th dose independent rect. 10 3
685 167.41 precipitation 0.1 43200 < th dose dependent rect. 10 3
686 167.42 precipitation 0.1 43200 < th dose independent rect. 8 5
689 167.42 precipitation 0.1 43200 < th dose dependent rect. 8 5
691 167.43 atmosphere 995.0 43200 < th dose independent rect. 22 14
692 167.43 atmosphere 995.0 43200 < th dose independent rect. 21 16
702 167.46 wind 7.0 43200 < th dose independent rect. 21 10
708 167.48 atmosphere 995.0 43200 > th dose independent rect. 3 7
718 167.50 atmosphere 995.0 43200 < th dose dependent sin 9 NA
721 167.52 wind 1.0 14400 > th dose independent rect. 23 3
730 167.53 humidity 70.0 43200 > th dose independent rect. 23 20
744 167.59 atmosphere 995.0 43200 < th dose dependent rect. 17 17
745 167.60 humidity 90.0 43200 > th dose dependent rect. 12 1
756 167.68 atmosphere 995.0 43200 > th dose independent rect. 1 10
758 167.68 wind 1.0 43200 < th dose dependent sin 17 NA
766 167.73 atmosphere 995.0 43200 < th dose dependent rect. 21 13
777 167.78 atmosphere 995.0 43200 < th dose independent rect. 2 8
782 167.79 atmosphere 995.0 43200 < th dose dependent rect. 1 8
792 167.82 atmosphere 995.0 43200 < th dose dependent rect. 4 4
793 167.83 atmosphere 1005.0 270 > th dose independent rect. 3 3
794 167.83 atmosphere 995.0 43200 < th dose independent rect. 3 6
796 167.83 wind 1.0 14400 < th dose dependent rect. 18 10
811 167.87 humidity 80.0 43200 > th dose independent rect. 18 19
819 167.90 wind 5.0 43200 > th dose dependent rect. 21 12
821 167.91 humidity 70.0 43200 > th dose independent rect. 17 10
832 167.93 atmosphere 995.0 43200 < th dose dependent rect. 23 10
852 168.00 humidity 70.0 43200 < th dose independent rect. 17 15
855 168.01 atmosphere 995.0 43200 < th dose independent rect. 5 3
863 168.03 radiation 10.0 43200 > th dose independent rect. 8 1
866 168.03 temperature 20.0 4320 > th dose dependent rect. 18 1
890 168.10 radiation 10.0 14400 > th dose independent rect. 6 1
913 168.17 humidity 70.0 43200 < th dose independent rect. 22 21
916 168.19 radiation 20.0 43200 > th dose independent rect. 9 5
923 168.23 humidity 50.0 90 > th dose dependent rect. 3 6
951 168.29 radiation 20.0 1440 < th dose dependent rect. 11 1
965 168.35 humidity 70.0 43200 < th dose independent rect. 17 10
969 168.36 temperature 15.0 4320 > th dose dependent rect. 20 1
973 168.38 wind 7.0 43200 < th dose independent rect. 8 1