Os05g0241400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0241400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.3 | 0.283 | 8.02 | -0.212 | 0.294 | -0.918 | -0.127 | -0.122 | 0.169 | 16.9 | 18.8 | 4079 | -- | -- |
| 36.11 | 0.28 | 8.03 | -0.237 | 0.282 | -0.909 | -0.0817 | -- | 0.17 | 17.2 | 18.32 | 4496 | -- | -- |
| 36.11 | 0.28 | 8.03 | -0.229 | 0.287 | -0.91 | -- | -0.0564 | 0.166 | 17.1 | 18.5 | 4541 | -- | -- |
| 36.11 | 0.28 | 8.03 | -0.248 | 0.276 | -0.928 | -- | -- | 0.163 | 17.2 | 18.47 | 4558 | -- | -- |
| 39.92 | 0.294 | 8.02 | -0.252 | -- | -1.05 | -- | -0.358 | 0.156 | -- | 18.4 | 4702 | -- | -- |
| 47.83 | 0.324 | 7.98 | 0.28 | 0.263 | -- | -0.0158 | -- | 0.359 | 17.2 | -- | -- | -- | -- |
| 47.84 | 0.324 | 7.98 | 0.28 | 0.263 | -- | -- | -- | 0.359 | 17.2 | -- | -- | -- | -- |
| 40.03 | 0.295 | 8.03 | -0.262 | -- | -0.93 | -- | -- | 0.155 | -- | 18.43 | 4702 | -- | -- |
| 37.06 | 0.284 | 8.02 | -- | 0.294 | -0.793 | -- | -- | 0.217 | 17 | 18.3 | 4018 | -- | -- |
| 51.46 | 0.335 | 7.98 | 0.27 | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
| 49.9 | 0.33 | 7.99 | -- | 0.258 | -- | -- | -- | 0.328 | 17.2 | -- | -- | -- | -- |
| 40.97 | 0.298 | 8.01 | -- | -- | -0.786 | -- | -- | 0.211 | -- | 18.72 | 3360 | -- | -- |
| 53.39 | 0.341 | 7.99 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.38 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 34.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 35.00 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 9 | 35.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 11 | 35.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 12 | 35.19 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 21 |
| 16 | 35.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 17 |
| 21 | 35.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 25 | 35.26 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 28 | 35.28 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 30 | 35.29 | humidity | 70 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 32 | 35.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 34 | 35.30 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 72 | 35.38 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 79 | 35.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 21 |
| 94 | 35.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 19 |
| 117 | 35.40 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 133 | 35.42 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 143 | 35.43 | humidity | 60 | 43200 | < th | dose dependent | sin | 1 | NA |
| 197 | 35.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 213 | 35.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 217 | 35.53 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 305 | 35.68 | radiation | 30 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 314 | 35.69 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 337 | 35.76 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 342 | 35.77 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 343 | 35.77 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 344 | 35.77 | humidity | 60 | 43200 | < th | dose dependent | sin | 10 | NA |
| 377 | 35.87 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 382 | 35.88 | radiation | 10 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 392 | 35.90 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 398 | 35.91 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 404 | 35.92 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 408 | 35.93 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 410 | 35.93 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 424 | 35.96 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 428 | 35.97 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 430 | 35.97 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 446 | 35.99 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 447 | 35.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 450 | 36.00 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 457 | 36.01 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 463 | 36.01 | humidity | 50 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 465 | 36.02 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 472 | 36.03 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 489 | 36.05 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 505 | 36.07 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 508 | 36.07 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 514 | 36.08 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 562 | 36.11 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 568 | 36.12 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 638 | 36.16 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 687 | 36.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 789 | 36.26 | humidity | 50 | 43200 | > th | dose independent | sin | 14 | NA |
| 830 | 36.30 | radiation | 20 | 43200 | > th | dose independent | sin | 6 | NA |
| 837 | 36.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 870 | 36.31 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 18 |
| 887 | 36.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 925 | 36.33 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 954 | 36.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 975 | 36.35 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 982 | 36.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |