BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0241400 Os05g0241400|AK107803
         (150 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19400.1  | chr4:10581037-10581909 REVERSE LENGTH=149          145   9e-36

>AT4G19400.1 | chr4:10581037-10581909 REVERSE LENGTH=149
          Length = 148

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 4   DWMWARRSWEKWAGK-HVGASGKPVKAALLLNYDPTGPSRLLPVVAEQEGTELKAVDLLP 62
           D  +  R+W+KW    +VG+SG P+KAA+L+NYDPTGPSRLL  +A+QEG ++  VDL  
Sbjct: 2   DSAFVDRAWDKWVTTGNVGSSGNPLKAAILINYDPTGPSRLLSTIAKQEGIDIYPVDLKQ 61

Query: 63  FLDFVRRNNLQMEFFSIGSNRYLVTSIHEHWFCARCVNAVQPEGEGVIVMEIGAY 117
           F+DF+R  NL  E F +GSN+Y++TSIHE+WF ARC+N  QP GEG IVM+   Y
Sbjct: 62  FIDFMRCGNLPTETFVLGSNQYIITSIHENWFAARCLNTSQPAGEGAIVMQTAVY 116



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,938,742
Number of extensions: 104095
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)