Os05g0241000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os05g0241000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.29 | 0.165 | 11.2 | 0.898 | 0.545 | -0.495 | -0.0468 | 0.33 | 0.354 | 21.1 | 25.6 | 10 | -- | -- |
| 12.3 | 0.165 | 11.2 | 0.863 | 0.543 | -0.47 | -0.0641 | -- | 0.346 | 21.2 | 25.6 | 10 | -- | -- |
| 12.27 | 0.164 | 11.2 | 0.899 | 0.541 | -0.497 | -- | 0.337 | 0.354 | 21.1 | 25.6 | 10 | -- | -- |
| 12.32 | 0.165 | 11.2 | 0.865 | 0.543 | -0.468 | -- | -- | 0.346 | 21.2 | 25.6 | 10 | -- | -- |
| 28.96 | 0.252 | 11.2 | 0.96 | -- | -0.624 | -- | 0.812 | 0.368 | -- | 25.6 | 10 | -- | -- |
| 15.55 | 0.185 | 11.2 | 0.798 | 0.584 | -- | 0.0209 | -- | 0.32 | 22.3 | -- | -- | -- | -- |
| 15.55 | 0.185 | 11.2 | 0.797 | 0.584 | -- | -- | -- | 0.32 | 22.3 | -- | -- | -- | -- |
| 28.42 | 0.248 | 11.2 | 0.916 | -- | -0.574 | -- | -- | 0.413 | -- | 21.1 | 2 | -- | -- |
| 31.24 | 0.262 | 11.3 | -- | 0.564 | -0.284 | -- | -- | 0.229 | 21.9 | 27.2 | 8 | -- | -- |
| 36.29 | 0.281 | 11.2 | 0.806 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 32.29 | 0.266 | 11.3 | -- | 0.588 | -- | -- | -- | 0.231 | 22.4 | -- | -- | -- | -- |
| 49.15 | 0.328 | 11.2 | -- | -- | -0.42 | -- | -- | 0.262 | -- | 24.6 | 3 | -- | -- |
| 53.43 | 0.341 | 11.3 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.53 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 8 | 11.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 19 | 11.80 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 29 | 11.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 53 | 11.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 68 | 11.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 75 | 11.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 81 | 11.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 89 | 12.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 94 | 12.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 104 | 12.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 145 | 12.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 187 | 12.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 203 | 12.16 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 225 | 12.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 226 | 12.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 230 | 12.17 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 232 | 12.17 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 256 | 12.18 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 260 | 12.18 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 261 | 12.18 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 274 | 12.19 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 276 | 12.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 287 | 12.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 432 | 12.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 434 | 12.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 459 | 12.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 469 | 12.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 470 | 12.34 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 529 | 12.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 542 | 12.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 687 | 12.48 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 767 | 12.53 | radiation | 10 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 784 | 12.54 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 867 | 12.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 902 | 12.61 | radiation | 10 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 903 | 12.61 | radiation | 10 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 904 | 12.61 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 14 |
| 938 | 12.63 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 957 | 12.64 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 976 | 12.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |