Os05g0220600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0220600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Rhomboid-like protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.74 | 0.36 | 9.6 | -0.404 | 1.57 | -0.65 | 0.342 | 0.378 | -0.574 | 10.8 | 24.1 | 143 | -- | -- |
| 59.29 | 0.359 | 9.58 | -0.265 | 1.58 | -0.63 | 0.231 | -- | -0.531 | 10.8 | 24.03 | 151 | -- | -- |
| 59.17 | 0.358 | 9.6 | -0.361 | 1.58 | -0.649 | -- | 0.291 | -0.568 | 10.8 | 24.07 | 151 | -- | -- |
| 59.53 | 0.359 | 9.58 | -0.254 | 1.57 | -0.633 | -- | -- | -0.529 | 10.8 | 24.09 | 151 | -- | -- |
| 196.89 | 0.657 | 9.66 | -0.476 | -- | -0.881 | -- | 0.243 | -0.682 | -- | 24.1 | 70 | -- | -- |
| 86.3 | 0.436 | 9.52 | -0.000606 | 1.66 | -- | 0.189 | -- | -0.244 | 11.2 | -- | -- | -- | -- |
| 86.44 | 0.435 | 9.52 | 0.00738 | 1.66 | -- | -- | -- | -0.243 | 11.2 | -- | -- | -- | -- |
| 195.44 | 0.651 | 9.65 | -0.39 | -- | -0.9 | -- | -- | -0.658 | -- | 24 | 57 | -- | -- |
| 61.12 | 0.364 | 9.57 | -- | 1.58 | -0.594 | -- | -- | -0.485 | 10.9 | 24.01 | 151 | -- | -- |
| 259.37 | 0.753 | 9.56 | -0.0337 | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
| 86.45 | 0.435 | 9.52 | -- | 1.66 | -- | -- | -- | -0.244 | 11.2 | -- | -- | -- | -- |
| 190.53 | 0.643 | 9.61 | -- | -- | -0.81 | -- | -- | -0.478 | -- | 25.9 | 3 | -- | -- |
| 259.4 | 0.752 | 9.56 | -- | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.95 | temperature | 10 | 30 | > th | dose dependent | sin | 6 | NA |
| 36 | 57.13 | temperature | 30 | 30 | < th | dose dependent | sin | 6 | NA |
| 71 | 59.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 93 | 60.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 103 | 60.72 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 117 | 61.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 122 | 61.16 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 123 | 61.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 135 | 61.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 139 | 61.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 153 | 61.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 156 | 61.80 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 158 | 61.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 159 | 61.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 162 | 61.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 176 | 62.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 177 | 62.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 185 | 62.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 199 | 62.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 202 | 62.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 209 | 62.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 237 | 62.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 239 | 62.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 242 | 62.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 251 | 62.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 293 | 63.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 308 | 63.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 338 | 63.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 350 | 63.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 408 | 63.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 452 | 64.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 521 | 64.37 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 542 | 64.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 559 | 64.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 571 | 64.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 592 | 64.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 610 | 64.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 631 | 64.71 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 681 | 64.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 700 | 64.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 701 | 64.87 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 710 | 64.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 813 | 65.08 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 22 |
| 821 | 65.09 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 840 | 65.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 901 | 65.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 912 | 65.24 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 1000 | 65.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 8 |