BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0220600 Os05g0220600|AK073669
(276 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25752.1 | chr5:8951503-8953323 REVERSE LENGTH=281 288 2e-78
AT5G25640.1 | chr5:8949849-8950331 REVERSE LENGTH=103 109 1e-24
AT1G12750.1 | chr1:4345100-4346688 REVERSE LENGTH=308 52 2e-07
AT5G07250.1 | chr5:2274437-2275935 REVERSE LENGTH=347 48 5e-06
>AT5G25752.1 | chr5:8951503-8953323 REVERSE LENGTH=281
Length = 280
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/214 (67%), Positives = 178/214 (83%), Gaps = 9/214 (4%)
Query: 53 CGMRRSDLVADLEL--AKDKQWQGRRPNGIFWILLLNVGIYVADHLFQIEHIKAMYLYHA 110
C +SD+ EL AKD + +R NGIFWI+L+N+GIY+ADH FQ+ IK++YLYH
Sbjct: 55 CRFSQSDITPQFELDKAKDNRKPQKRANGIFWIILINLGIYLADHFFQVRGIKSLYLYHN 114
Query: 111 FPSWFQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGSFALWMSYILTGAGSNLISWL 170
FP+W+QFVT+TFCHANWNHLSSNLFF+YIFGKLVEEEEG+F LW+SY+ TG G+NL+SWL
Sbjct: 115 FPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWL 174
Query: 171 VLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKVMEAARA------ 224
VLP ++VS+GASGAVFGLF ISVLVKMSWDWRKILEVLILGQFV+++VMEAA+A
Sbjct: 175 VLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSG 234
Query: 225 TTVTGHSLQ-VNNIAHLSGALIGAALVFLINRIP 257
T G+SLQ VN+IAHLSGAL+G LV+L+++ P
Sbjct: 235 TIYGGYSLQTVNHIAHLSGALVGVVLVWLLSKFP 268
>AT5G25640.1 | chr5:8949849-8950331 REVERSE LENGTH=103
Length = 102
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 69/87 (79%)
Query: 137 VYIFGKLVEEEEGSFALWMSYILTGAGSNLISWLVLPTSSVSLGASGAVFGLFTISVLVK 196
+++ GK+VEEE+G+F LW+SY+ TG G+N++SW LP +S GASGAVFGLF ISVLVK
Sbjct: 5 LWLTGKIVEEEKGNFGLWLSYLFTGVGANMVSWFTLPPNSFFSGASGAVFGLFVISVLVK 64
Query: 197 MSWDWRKILEVLILGQFVVDKVMEAAR 223
MS W K LEVLILGQFV+ + +++ R
Sbjct: 65 MSRGWSKFLEVLILGQFVMKRFIDSHR 91
>AT1G12750.1 | chr1:4345100-4346688 REVERSE LENGTH=308
Length = 307
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 116 QFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGSFALWMSYILTGAGSNLISWLVLPTS 175
+ +T+ + HA HL N+F V IFG +E++ G + + Y+++G G +++S L L
Sbjct: 99 RLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFL-QK 157
Query: 176 SVSLGASGAVFGLFTISVLVKMSWDW---RKILEVLILGQFVVDKVMEAARATTVTGHSL 232
S+S+GASGA+ GL ++L ++ +W + L L+ F++ G
Sbjct: 158 SISVGASGALLGLMG-AMLSELLTNWTIYKSKLCALLSFLFIIA-------INLAIGLLP 209
Query: 233 QVNNIAHLSGALIGAALVFLINRIP 257
V+N AH+ G L G L F++ P
Sbjct: 210 WVDNFAHIGGLLTGFCLGFILLMQP 234
>AT5G07250.1 | chr5:2274437-2275935 REVERSE LENGTH=347
Length = 346
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 116 QFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGSFALWMSYILTGAGSNLISWLVLPTS 175
+ +T + HA HL +N+ + G +E++ G + + Y+L+G G +++S L + +
Sbjct: 136 RLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGSVLSSLFI-RN 194
Query: 176 SVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKVMEAARATTVTGHSLQVN 235
S+S+GASGA+FGL S+L ++ +W I I + V+ A + H V+
Sbjct: 195 SISVGASGALFGLLG-SMLSELFTNW-TIYSNKIAALLTLLFVILINLAIGILPH---VD 249
Query: 236 NIAHLSGALIGAALVFLI 253
N AH+ G + G L F++
Sbjct: 250 NFAHVGGFVTGFLLGFIL 267
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,527,020
Number of extensions: 169738
Number of successful extensions: 513
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 8
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)