FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0219900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C4-dicarboxylate transporter/malic acid transport protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.0345) R2 : 0.465
β1 : 0.899 (0.13) R2dD : 0.0641 R2D : 0.112
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.76 (0.107) R2dE : 0.327 R2E : 0.389
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.261 (0.0738) R2dN8 : 0.0236 R2N8 : 0.0115
σ : 0.646
deviance : 192.19
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.18
memory length : 5188
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 4.48

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.75 0.625 3.97 2.43 0.235 1.21 -0.476 5.02 0.394 5.68 21.6 3667 20.6 0.915
188.91 0.64 4.05 0.985 0.634 1.71 0.0835 -- 0.275 5.96 24.25 6025 20.1 3.28
176.75 0.619 3.97 2.39 0.246 1.24 -- 4.91 0.379 6.97 21.6 3646 20.7 0.783
188.41 0.639 4.04 0.958 0.622 1.74 -- -- 0.258 5.85 24.21 5988 20.3 3.74
179.78 0.624 3.97 2.42 -- 1.28 -- 5 0.377 -- 21.49 3653 20.8 0.766
281.9 0.787 4.03 1.39 0.617 -- 0.222 -- 0.372 4.86 -- -- -- --
282.02 0.786 4.03 1.39 0.618 -- -- -- 0.371 4.83 -- -- -- --
192.19 0.646 4.08 0.899 -- 1.76 -- -- 0.261 -- 24.18 5188 20 4.48
209.64 0.674 4.05 -- 0.6 1.86 -- -- 0.188 5.98 23.88 5939 21.5 2.54
302.23 0.812 4.04 1.42 -- -- -- -- 0.387 -- -- -- -- --
333.23 0.854 4.07 -- 0.644 -- -- -- 0.216 4.76 -- -- -- --
209.95 0.675 4.06 -- -- 1.9 -- -- 0.146 -- 23.8 6520 23.1 0.23
355.19 0.88 4.07 -- -- -- -- -- 0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.23 temperature 20.0 4320 > th dose dependent rect. 21 1
7 189.05 precipitation 0.1 43200 > th dose dependent rect. 20 5
13 189.85 radiation 1.0 4320 > th dose independent rect. 17 1
21 190.36 temperature 30.0 4320 < th dose dependent rect. 21 1
26 190.80 temperature 20.0 1440 > th dose dependent rect. 6 1
40 191.30 precipitation 0.1 43200 > th dose independent rect. 20 3
41 191.31 precipitation 0.1 43200 < th dose independent rect. 20 3
42 191.31 precipitation 0.1 43200 < th dose dependent rect. 20 3
98 192.42 radiation 1.0 4320 < th dose independent rect. 17 1
100 192.43 radiation 1.0 4320 < th dose dependent rect. 17 1
111 192.60 radiation 1.0 4320 > th dose independent rect. 16 14
141 193.08 precipitation 0.1 43200 > th dose independent rect. 17 6
146 193.15 precipitation 0.1 43200 < th dose independent rect. 17 6
147 193.15 precipitation 0.1 43200 < th dose dependent rect. 17 6
150 193.18 precipitation 0.1 43200 > th dose dependent rect. 17 10
156 193.28 radiation 1.0 4320 < th dose independent rect. 16 14
159 193.33 radiation 1.0 4320 < th dose independent rect. 17 4
161 193.34 radiation 1.0 4320 < th dose independent rect. 17 7
169 193.44 radiation 1.0 4320 < th dose independent rect. 17 11
237 194.05 radiation 1.0 4320 < th dose dependent rect. 17 11
299 194.75 precipitation 0.1 43200 > th dose dependent rect. 20 23
304 194.79 radiation 1.0 4320 > th dose independent rect. 11 19
355 195.34 temperature 20.0 4320 > th dose dependent sin 12 NA
386 195.59 temperature 20.0 1440 > th dose dependent sin 10 NA
389 195.60 radiation 1.0 4320 < th dose independent rect. 11 19
408 195.73 precipitation 0.1 43200 > th dose dependent rect. 17 20
434 196.01 radiation 20.0 4320 > th dose independent rect. 15 2
461 196.11 wind 7.0 43200 > th dose dependent rect. 20 11
462 196.12 precipitation 0.1 43200 > th dose dependent rect. 14 13
496 196.31 precipitation 0.1 43200 > th dose dependent sin 14 NA
500 196.32 temperature 25.0 4320 < th dose independent rect. 20 4
520 196.37 temperature 25.0 4320 > th dose independent rect. 20 4
532 196.43 wind 9.0 43200 < th dose independent rect. 20 10
572 196.74 wind 9.0 43200 > th dose independent rect. 20 11
576 196.81 precipitation 0.1 43200 > th dose dependent rect. 17 22
607 196.94 precipitation 0.1 43200 > th dose dependent rect. 14 15
608 196.95 temperature 25.0 4320 < th dose independent rect. 20 2
620 197.02 precipitation 0.1 43200 > th dose dependent rect. 8 19
646 197.14 precipitation 0.1 43200 > th dose dependent rect. 10 17
664 197.22 precipitation 0.1 43200 > th dose dependent rect. 12 15
685 197.34 radiation 1.0 4320 > th dose independent sin 15 NA
717 197.45 temperature 30.0 4320 < th dose dependent sin 12 NA
737 197.54 precipitation 0.1 43200 > th dose dependent rect. 14 23
823 197.96 precipitation 0.1 43200 > th dose dependent rect. 20 15
825 197.97 temperature 30.0 1440 < th dose dependent rect. 6 1
834 197.99 precipitation 0.1 43200 > th dose dependent rect. 20 13
839 198.01 temperature 25.0 1440 < th dose independent rect. 6 1
842 198.02 radiation 20.0 4320 > th dose dependent rect. 15 1
885 198.21 temperature 20.0 4320 > th dose dependent rect. 1 1
969 198.50 precipitation 0.1 43200 > th dose dependent rect. 24 23