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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0203400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : dTDP-glucose 4,6-dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0225) R2 : 0.00103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0325 (0.0474) R2dN8 : 0.00132 R2N8 : 0.00103
σ : 0.424
deviance : 82.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.1 0.418 2.91 -0.0678 0.123 0.382 0.0615 -1.98 0.0391 6 0.1085 3111 -- --
81.56 0.421 2.89 -0.0983 0.121 0.156 0.0193 -- 0.0395 6.06 0.5 4213 -- --
79.11 0.414 2.91 -0.0676 0.123 0.382 -- -1.98 0.0392 5.96 0.3415 3110 -- --
81.55 0.421 2.89 -0.0982 0.12 0.164 -- -- 0.0408 6.01 0.4978 4693 -- --
79.9 0.416 2.91 -0.0657 -- 0.384 -- -1.95 0.042 -- 0.3486 3110 -- --
81.78 0.424 2.89 -0.0792 0.12 -- 0.0229 -- 0.0217 6.58 -- -- -- --
81.78 0.423 2.89 -0.0789 0.12 -- -- -- 0.0216 6.59 -- -- -- --
82.25 0.422 2.89 -0.0998 -- 0.167 -- -- 0.0384 -- 0.5 3380 -- --
81.75 0.421 2.88 -- 0.119 0.1 -- -- 0.043 6.51 0.471 6210 -- --
82.53 0.425 2.89 -0.076 -- -- -- -- 0.024 -- -- -- -- --
81.95 0.423 2.89 -- 0.119 -- -- -- 0.0304 6.63 -- -- -- --
82.44 0.423 2.88 -- -- 0.0909 -- -- 0.0576 -- 0.4084 15630 -- --
82.68 0.424 2.89 -- -- -- -- -- 0.0325 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.80 humidity 80.0 720 < th dose independent rect. 24 1
3 70.80 humidity 80.0 720 < th dose dependent rect. 24 1
6 70.88 humidity 80.0 10 < th dose independent rect. 24 4
11 70.88 humidity 80.0 10 < th dose dependent rect. 24 4
15 70.90 humidity 80.0 30 < th dose independent rect. 23 1
23 70.90 humidity 80.0 30 < th dose dependent rect. 23 1
75 76.52 wind 7.0 30 > th dose dependent rect. 15 1
119 77.37 wind 7.0 10 > th dose independent rect. 14 2
124 77.45 temperature 25.0 1440 < th dose dependent rect. 10 1
133 77.59 temperature 20.0 270 < th dose dependent rect. 22 1
135 77.60 temperature 30.0 90 < th dose dependent rect. 10 6
139 77.68 temperature 20.0 270 < th dose dependent rect. 7 17
143 77.75 temperature 20.0 270 < th dose independent rect. 8 16
152 77.82 temperature 20.0 270 < th dose independent rect. 19 5
153 77.82 wind 9.0 30 < th dose independent rect. 21 23
157 77.84 temperature 20.0 270 < th dose independent rect. 20 3
166 77.87 temperature 20.0 270 < th dose dependent rect. 19 5
255 78.24 wind 7.0 270 > th dose dependent rect. 20 1
263 78.27 radiation 10.0 14400 < th dose dependent rect. 21 1
299 78.42 atmosphere 1000.0 30 > th dose dependent rect. 10 21
307 78.45 wind 7.0 270 > th dose independent rect. 12 2
308 78.45 wind 7.0 270 > th dose dependent rect. 12 1
309 78.45 wind 1.0 43200 > th dose dependent rect. 23 2
319 78.47 wind 7.0 270 > th dose independent rect. 20 1
333 78.49 atmosphere 1005.0 10 > th dose dependent rect. 15 1
353 78.53 wind 5.0 30 < th dose independent rect. 20 1
354 78.53 humidity 80.0 30 > th dose independent rect. 20 1
355 78.53 atmosphere 1005.0 30 > th dose independent rect. 20 1
356 78.53 wind 9.0 30 < th dose dependent rect. 20 1
357 78.53 atmosphere 995.0 30 > th dose dependent rect. 20 1
363 78.54 wind 1.0 30 > th dose independent rect. 20 1
366 78.54 temperature 10.0 30 > th dose independent rect. 20 1
368 78.54 temperature 30.0 30 < th dose independent rect. 20 1
369 78.54 humidity 50.0 30 > th dose independent rect. 20 1
372 78.54 atmosphere 995.0 30 > th dose independent rect. 20 1
374 78.54 atmosphere 1010.0 30 < th dose independent rect. 20 1
376 78.54 radiation 1.0 30 < th dose independent rect. 20 1
381 78.54 precipitation 0.1 30 < th dose independent rect. 20 1
383 78.54 temperature 10.0 30 > th dose independent rect. 21 23
385 78.54 humidity 50.0 30 > th dose dependent rect. 20 1
387 78.54 radiation 1.0 30 < th dose dependent rect. 20 1
392 78.54 precipitation 0.1 30 < th dose dependent rect. 20 1
393 78.55 temperature 10.0 30 > th dose dependent rect. 20 1
403 78.57 temperature 25.0 30 > th dose independent rect. 20 1
404 78.57 temperature 10.0 1440 > th dose independent rect. 21 1
407 78.57 temperature 30.0 1440 < th dose independent rect. 21 1
411 78.57 humidity 50.0 1440 > th dose independent rect. 21 1
417 78.57 atmosphere 995.0 1440 > th dose independent rect. 21 1
418 78.57 radiation 1.0 1440 < th dose independent rect. 21 1
438 78.57 temperature 10.0 1440 > th dose independent rect. 22 23
441 78.57 temperature 25.0 30 > th dose dependent rect. 20 1
448 78.58 humidity 90.0 30 < th dose independent rect. 20 1
459 78.60 wind 1.0 30 > th dose dependent rect. 20 1
460 78.60 atmosphere 1015.0 30 < th dose dependent rect. 20 1
479 78.63 temperature 30.0 10 < th dose dependent rect. 11 14
492 78.65 temperature 30.0 30 < th dose dependent rect. 20 1
495 78.66 radiation 30.0 30 < th dose independent rect. 10 6
496 78.66 radiation 30.0 90 < th dose dependent rect. 10 1
508 78.68 temperature 30.0 90 < th dose dependent rect. 10 21
511 78.69 atmosphere 995.0 14400 > th dose independent rect. 6 5
521 78.71 temperature 20.0 270 < th dose dependent sin 20 NA
522 78.71 humidity 90.0 30 < th dose dependent rect. 20 1
571 78.79 temperature 10.0 30 > th dose dependent rect. 7 13
577 78.81 temperature 30.0 270 < th dose dependent rect. 8 21
592 78.83 precipitation 0.1 4320 < th dose independent rect. 6 1
595 78.83 precipitation 0.1 4320 < th dose dependent rect. 6 1
601 78.84 precipitation 0.1 4320 < th dose independent rect. 9 2
602 78.84 precipitation 0.1 4320 < th dose dependent rect. 9 2
611 78.85 radiation 20.0 90 < th dose independent rect. 10 1
614 78.85 wind 9.0 43200 < th dose dependent rect. 23 2
654 78.87 temperature 20.0 270 < th dose independent sin 20 NA
689 78.90 temperature 30.0 90 < th dose dependent rect. 10 19
692 78.91 temperature 25.0 270 < th dose independent rect. 8 21
741 78.98 radiation 40.0 30 < th dose independent rect. 10 21
745 78.98 temperature 30.0 90 < th dose dependent rect. 22 18
757 79.00 wind 5.0 90 > th dose independent rect. 22 1
764 79.01 radiation 20.0 720 < th dose independent rect. 9 2
786 79.03 precipitation 0.1 4320 > th dose dependent rect. 8 6
805 79.05 wind 1.0 4320 < th dose independent rect. 19 1
823 79.07 radiation 20.0 270 < th dose independent rect. 8 8
828 79.07 radiation 40.0 90 < th dose dependent rect. 10 6
839 79.09 wind 1.0 4320 > th dose independent rect. 19 1
854 79.10 radiation 30.0 720 < th dose dependent rect. 10 1
856 79.10 precipitation 0.1 4320 > th dose dependent rect. 11 3
865 79.11 wind 1.0 720 > th dose independent rect. 13 8
869 79.11 precipitation 0.1 4320 > th dose dependent rect. 21 1
881 79.12 precipitation 0.1 4320 > th dose independent rect. 21 1
883 79.12 temperature 10.0 720 > th dose dependent rect. 7 2
889 79.13 precipitation 0.1 270 > th dose independent rect. 9 1
893 79.13 temperature 25.0 720 < th dose dependent sin 23 NA
894 79.13 wind 1.0 4320 < th dose dependent rect. 19 1
896 79.13 precipitation 0.1 270 > th dose dependent rect. 9 1
900 79.13 humidity 90.0 720 > th dose dependent rect. 10 3
905 79.14 precipitation 0.1 4320 > th dose independent rect. 9 2
910 79.14 precipitation 0.1 4320 > th dose dependent rect. 9 2
913 79.14 precipitation 0.1 4320 > th dose dependent rect. 21 3
915 79.14 precipitation 0.1 4320 > th dose dependent rect. 19 5
920 79.15 wind 5.0 270 > th dose independent rect. 20 3
934 79.16 precipitation 0.1 4320 > th dose independent rect. 6 1
938 79.16 precipitation 0.1 4320 > th dose dependent rect. 6 1
944 79.17 precipitation 0.1 4320 > th dose independent rect. 21 3
964 79.18 atmosphere 1005.0 30 > th dose independent rect. 10 6
972 79.18 radiation 40.0 720 < th dose dependent rect. 23 8
978 79.18 temperature 10.0 90 > th dose dependent rect. 7 15
985 79.19 precipitation 0.1 4320 < th dose independent rect. 21 1
986 79.19 precipitation 0.1 4320 < th dose independent rect. 21 3
989 79.19 temperature 25.0 720 > th dose independent rect. 7 10
992 79.19 precipitation 0.1 4320 < th dose dependent rect. 21 1
997 79.19 precipitation 0.1 4320 < th dose dependent rect. 21 3