Os05g0195400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0195400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.9 | 0.556 | 7.8 | 0.826 | 0.212 | 2.45 | 0.0984 | 0.477 | -0.328 | 5.47 | 25.32 | 839 | -- | -- |
| 140.19 | 0.551 | 7.79 | 0.911 | 0.207 | 2.41 | 0.108 | -- | -0.303 | 5.32 | 25.53 | 840 | -- | -- |
| 139.92 | 0.551 | 7.8 | 0.823 | 0.214 | 2.46 | -- | 0.495 | -0.329 | 5.46 | 25.29 | 840 | -- | -- |
| 140.22 | 0.552 | 7.79 | 0.912 | 0.207 | 2.41 | -- | -- | -0.303 | 5.29 | 25.55 | 839 | -- | -- |
| 141.33 | 0.554 | 7.8 | 0.844 | -- | 2.44 | -- | 0.333 | -0.311 | -- | 25.6 | 732 | -- | -- |
| 225.47 | 0.704 | 7.9 | 0.216 | 0.448 | -- | 0.144 | -- | -0.825 | 8.99 | -- | -- | -- | -- |
| 225.55 | 0.703 | 7.9 | 0.221 | 0.448 | -- | -- | -- | -0.825 | 9.01 | -- | -- | -- | -- |
| 141.47 | 0.554 | 7.8 | 0.906 | -- | 2.41 | -- | -- | -0.3 | -- | 25.7 | 731 | -- | -- |
| 159.34 | 0.588 | 7.84 | -- | 0.173 | 2 | -- | -- | -0.477 | 5.96 | 25.3 | 792 | -- | -- |
| 237.06 | 0.719 | 7.91 | 0.221 | -- | -- | -- | -- | -0.822 | -- | -- | -- | -- | -- |
| 226.84 | 0.705 | 7.91 | -- | 0.448 | -- | -- | -- | -0.85 | 8.97 | -- | -- | -- | -- |
| 160.53 | 0.59 | 7.83 | -- | -- | 2.05 | -- | -- | -0.464 | -- | 25.7 | 718 | -- | -- |
| 238.34 | 0.721 | 7.92 | -- | -- | -- | -- | -- | -0.847 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 9 | 138.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 18 | 139.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 26 | 139.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 31 | 139.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 33 | 139.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 36 | 139.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 59 | 139.71 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 72 | 139.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 106 | 140.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 117 | 140.23 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 153 | 140.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 162 | 140.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 187 | 140.72 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 198 | 140.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 201 | 140.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 206 | 140.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 375 | 141.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 379 | 141.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 472 | 142.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 604 | 142.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 643 | 142.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 739 | 143.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 22 |