Os05g0189900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os05g0189900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1262.11 | 1.67 | 5.86 | -5.23 | 1.59 | 3.78 | 2.51 | 0.277 | -1.57 | 3.63 | 19.98 | 4432 | -- | -- |
| 1262.21 | 1.65 | 5.85 | -5.19 | 1.59 | 3.73 | 2.5 | -- | -1.56 | 3.62 | 20 | 4429 | -- | -- |
| 1279.78 | 1.67 | 5.86 | -5.24 | 1.62 | 3.79 | -- | 0.207 | -1.56 | 3.31 | 20 | 4351 | -- | -- |
| 1279.73 | 1.67 | 5.86 | -5.23 | 1.62 | 3.73 | -- | -- | -1.57 | 3.31 | 20 | 4345 | -- | -- |
| 1420.63 | 1.76 | 5.87 | -5.23 | -- | 3.79 | -- | 0.412 | -1.54 | -- | 20 | 4593 | -- | -- |
| 1495.65 | 1.81 | 6.07 | -7.49 | 1.52 | -- | 2.7 | -- | -2.56 | 3.71 | -- | -- | -- | -- |
| 1515.75 | 1.82 | 6.09 | -7.53 | 1.53 | -- | -- | -- | -2.58 | 3.26 | -- | -- | -- | -- |
| 1416.32 | 1.75 | 5.84 | -5.22 | -- | 3.83 | -- | -- | -1.52 | -- | 20 | 3214 | -- | -- |
| 1422.26 | 1.76 | 5.57 | -- | 1.6 | 6.47 | -- | -- | -0.265 | 3.15 | 18 | 47520 | -- | -- |
| 1647.45 | 1.9 | 6.09 | -7.47 | -- | -- | -- | -- | -2.54 | -- | -- | -- | -- | -- |
| 3011.52 | 2.57 | 5.9 | -- | 1.38 | -- | -- | -- | -1.74 | 3.27 | -- | -- | -- | -- |
| 1568.12 | 1.84 | 5.57 | -- | -- | 6.38 | -- | -- | -0.25 | -- | 18.09 | 47520 | -- | -- |
| 3118.85 | 2.61 | 5.9 | -- | -- | -- | -- | -- | -1.71 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1201.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 5 | 1225.39 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 7 | 1227.13 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 11 | 1232.67 | wind | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 17 | 1238.41 | wind | 1 | 14400 | < th | dose dependent | rect. | 15 | 16 |
| 18 | 1238.87 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 21 | 1239.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 12 |
| 49 | 1246.07 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 77 | 1251.68 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 80 | 1252.23 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 86 | 1252.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 103 | 1254.51 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 106 | 1254.66 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 113 | 1256.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 115 | 1256.13 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 120 | 1256.31 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 126 | 1256.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 130 | 1256.57 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 132 | 1256.67 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 134 | 1256.71 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 138 | 1256.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 142 | 1257.19 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 150 | 1257.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 17 |
| 151 | 1257.66 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 156 | 1257.84 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 160 | 1257.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 17 |
| 221 | 1259.76 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 222 | 1259.80 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 223 | 1259.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 232 | 1260.07 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 11 | NA |
| 253 | 1260.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 270 | 1260.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 313 | 1261.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 329 | 1261.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 355 | 1262.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 398 | 1262.55 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 427 | 1262.94 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 439 | 1263.06 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 446 | 1263.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 457 | 1263.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 473 | 1263.45 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 491 | 1263.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 536 | 1264.49 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 672 | 1267.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 692 | 1268.67 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 746 | 1270.70 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 761 | 1271.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 765 | 1271.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 800 | 1272.78 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 818 | 1273.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 852 | 1274.16 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 897 | 1275.36 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 903 | 1275.48 | wind | 1 | 14400 | < th | dose independent | sin | 13 | NA |
| 906 | 1275.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 11 |
| 916 | 1275.90 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 920 | 1275.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 12 |
| 955 | 1276.90 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 968 | 1277.24 | wind | 5 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 974 | 1277.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 984 | 1277.70 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 1000 | 1277.70 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |