Os05g0189300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os05g0189300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.49 | 0.727 | 3.34 | -0.404 | 0.141 | -0.883 | -0.657 | 1.89 | -0.0668 | 24 | 20.8 | 2941 | -- | -- |
| 246.94 | 0.732 | 3.37 | -0.787 | 0.0877 | -1.07 | -0.581 | -- | -0.0681 | 23.8 | 20.7 | 2978 | -- | -- |
| 241.18 | 0.723 | 3.34 | -0.382 | 0.137 | -0.896 | -- | 1.89 | -0.0579 | 1.09 | 20.9 | 2963 | -- | -- |
| 244.2 | 0.728 | 3.4 | -0.679 | 0.104 | -1.39 | -- | -- | -0.189 | 23 | 19.2 | 2986 | -- | -- |
| 242.63 | 0.725 | 3.34 | -0.375 | -- | -0.873 | -- | 1.89 | -0.0637 | -- | 20.89 | 2977 | -- | -- |
| 273.98 | 0.776 | 3.49 | -1.42 | 0.09 | -- | -0.748 | -- | -0.48 | 22.3 | -- | -- | -- | -- |
| 275.83 | 0.778 | 3.49 | -1.4 | 0.124 | -- | -- | -- | -0.48 | 1.29 | -- | -- | -- | -- |
| 244.55 | 0.728 | 3.42 | -0.664 | -- | -1.45 | -- | -- | -0.174 | -- | 19.19 | 2986 | -- | -- |
| 247.79 | 0.733 | 3.38 | -- | 0.122 | -1.62 | -- | -- | -0.0257 | 23.6 | 18.2 | 17560 | -- | -- |
| 276.77 | 0.777 | 3.49 | -1.39 | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
| 327.2 | 0.846 | 3.45 | -- | 0.101 | -- | -- | -- | -0.325 | 0.771 | -- | -- | -- | -- |
| 248.75 | 0.735 | 3.38 | -- | -- | -1.63 | -- | -- | -0.0299 | -- | 18.2 | 17475 | -- | -- |
| 327.83 | 0.845 | 3.45 | -- | -- | -- | -- | -- | -0.323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.70 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 2 | 236.30 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 3 | 236.37 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 4 | 236.45 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 5 | 236.48 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 6 | 236.59 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 7 | 236.70 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 8 | 236.80 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 11 | 237.17 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 13 | 237.41 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 15 | 237.57 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 17 | 237.68 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 32 | 237.74 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 34 | 237.87 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 35 | 237.89 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 40 | 238.00 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 57 | 238.07 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 59 | 238.15 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 64 | 238.20 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 71 | 238.34 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 73 | 238.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 76 | 238.40 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 78 | 238.42 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 82 | 238.46 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 88 | 238.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 110 | 238.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 111 | 238.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 113 | 238.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 120 | 239.03 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 126 | 239.08 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 135 | 239.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 153 | 239.41 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 239 | 239.89 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 244 | 239.93 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 299 | 240.16 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 413 | 240.57 | radiation | 1.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 440 | 240.64 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 456 | 240.70 | temperature | 20.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 468 | 240.74 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 495 | 240.82 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 501 | 240.84 | temperature | 20.0 | 4320 | < th | dose independent | sin | 18 | NA |
| 544 | 240.95 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 633 | 241.22 | radiation | 1.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 638 | 241.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 12 |
| 647 | 241.24 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 649 | 241.24 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 651 | 241.24 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 749 | 241.31 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 753 | 241.31 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 760 | 241.32 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 761 | 241.32 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 763 | 241.32 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 796 | 241.37 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 837 | 241.45 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 838 | 241.46 | wind | 3.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 840 | 241.46 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 859 | 241.48 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 860 | 241.48 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 926 | 241.61 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 960 | 241.61 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 23 |