Os05g0187100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hexokinase.
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Os05g0187100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hexokinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.87 | 0.639 | 9.24 | 2.02 | 2.61 | -1.4 | 2.53 | 0.851 | 0.699 | 17 | 20.7 | 765 | 2.08 | -- |
| 186.48 | 0.636 | 9.22 | 2.17 | 2.66 | -1.48 | 2.36 | -- | 0.724 | 17 | 20.6 | 753 | 1.63 | -- |
| 199.02 | 0.657 | 9.25 | 1.85 | 2.71 | -1.38 | -- | 1.2 | 0.673 | 17 | 20.5 | 952 | 2.59 | -- |
| 200.65 | 0.66 | 9.21 | 2.15 | 2.64 | -1.7 | -- | -- | 0.743 | 16.9 | 20.64 | 684 | 6.49e-05 | -- |
| 530.83 | 1.07 | 9.16 | 2.02 | -- | -1.94 | -- | 0.409 | 0.651 | -- | 20.93 | 562 | 4.16 | -- |
| 238.49 | 0.724 | 9.16 | 2.59 | 2.65 | -- | 2.75 | -- | 1.02 | 17.4 | -- | -- | -- | -- |
| 257.17 | 0.751 | 9.15 | 2.58 | 2.67 | -- | -- | -- | 1.04 | 17.5 | -- | -- | -- | -- |
| 243.88 | 0.727 | 9.1 | 2.49 | -- | -2.78 | -- | -- | 1.05 | -- | 28.7 | 435 | 4.13 | -- |
| 240.93 | 0.723 | 9.34 | -- | 2.69 | -2.17 | -- | -- | 0.211 | 17.4 | 18.22 | 47520 | 1.85 | -- |
| 628.04 | 1.17 | 9.12 | 2.49 | -- | -- | -- | -- | 0.971 | -- | -- | -- | -- | -- |
| 432.8 | 0.973 | 9.22 | -- | 2.63 | -- | -- | -- | 0.749 | 17.5 | -- | -- | -- | -- |
| 383.69 | 0.912 | 9.4 | -- | -- | -3.63 | -- | -- | 0.287 | -- | 35.5 | 47520 | 0.541 | -- |
| 791.93 | 1.31 | 9.18 | -- | -- | -- | -- | -- | 0.694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.61 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 6 | 180.52 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 11 | 181.14 | humidity | 90 | 30 | < th | dose dependent | rect. | 20 | 18 |
| 17 | 181.97 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 26 | 182.90 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 28 | 183.08 | humidity | 90 | 30 | < th | dose dependent | rect. | 22 | 16 |
| 40 | 183.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 42 | 183.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 46 | 183.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 70 | 184.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 111 | 186.61 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 7 |
| 118 | 186.77 | humidity | 90 | 30 | < th | dose dependent | rect. | 3 | 11 |
| 134 | 187.18 | humidity | 90 | 30 | < th | dose dependent | rect. | 5 | 9 |
| 136 | 187.21 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 156 | 187.56 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 163 | 187.67 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 166 | 187.72 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 169 | 187.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 174 | 187.86 | humidity | 50 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 200 | 188.45 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 263 | 189.67 | humidity | 90 | 90 | < th | dose dependent | sin | 6 | NA |
| 342 | 190.57 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 369 | 190.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 370 | 190.96 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 380 | 191.08 | humidity | 60 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 422 | 191.49 | radiation | 20 | 270 | < th | dose independent | rect. | 22 | 10 |
| 460 | 192.06 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 492 | 192.46 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 503 | 192.59 | humidity | 60 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 541 | 192.90 | humidity | 50 | 90 | > th | dose dependent | sin | 6 | NA |
| 575 | 193.42 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 579 | 193.45 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 611 | 193.75 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 5 |
| 626 | 193.95 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 643 | 194.02 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 21 |
| 661 | 194.20 | radiation | 40 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 704 | 194.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 741 | 194.91 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 17 |
| 782 | 194.99 | radiation | 10 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 800 | 195.10 | humidity | 70 | 90 | > th | dose independent | rect. | 23 | 10 |
| 828 | 195.25 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 839 | 195.38 | wind | 7 | 270 | < th | dose independent | rect. | 12 | 6 |
| 852 | 195.47 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 853 | 195.49 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 19 |
| 890 | 195.73 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 920 | 195.93 | humidity | 90 | 270 | < th | dose independent | rect. | 18 | 18 |
| 941 | 196.03 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 15 |