Os05g0185700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribokinase family protein.
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Os05g0185700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.23 | 0.231 | 7.95 | 0.141 | 0.693 | -0.0739 | -0.458 | 0.467 | 0.238 | 7.79 | 1005 | 15 | -- | -- |
| 25.49 | 0.235 | 7.94 | 0.136 | 0.698 | -0.0627 | -0.461 | -- | 0.224 | 7.74 | 1005 | 15 | -- | -- |
| 24.83 | 0.232 | 7.95 | 0.129 | 0.693 | -0.0767 | -- | 0.468 | 0.238 | 7.75 | 1005 | 13 | -- | -- |
| 26.09 | 0.238 | 7.94 | 0.115 | 0.698 | -0.0653 | -- | -- | 0.222 | 7.73 | 1005 | 15 | -- | -- |
| 49.78 | 0.329 | 7.97 | 0.126 | -- | 0.0321 | -- | 0.592 | 0.208 | -- | 1006 | 13 | -- | -- |
| 25.8 | 0.238 | 7.95 | 0.129 | 0.689 | -- | -0.472 | -- | 0.197 | 7.82 | -- | -- | -- | -- |
| 26.44 | 0.241 | 7.95 | 0.116 | 0.69 | -- | -- | -- | 0.198 | 7.78 | -- | -- | -- | -- |
| 50.58 | 0.333 | 7.97 | 0.138 | -- | 0.171 | -- | -- | 0.189 | -- | 1009 | 2 | -- | -- |
| 26.44 | 0.239 | 7.95 | -- | 0.698 | -0.0659 | -- | -- | 0.21 | 7.72 | 1005 | 14 | -- | -- |
| 52.19 | 0.338 | 7.97 | 0.124 | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
| 26.8 | 0.242 | 7.95 | -- | 0.691 | -- | -- | -- | 0.185 | 7.77 | -- | -- | -- | -- |
| 51.07 | 0.334 | 7.97 | -- | -- | 0.166 | -- | -- | 0.175 | -- | 1009 | 2 | -- | -- |
| 52.6 | 0.339 | 7.97 | -- | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.66 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 2 | 22.85 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 39 | 22.96 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 44 | 22.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 48 | 22.98 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 57 | 23.08 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 58 | 23.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 86 | 23.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 91 | 23.17 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 92 | 23.18 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 104 | 23.21 | wind | 7.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 114 | 23.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 116 | 23.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 121 | 23.23 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 123 | 23.23 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 129 | 23.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 131 | 23.26 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 134 | 23.26 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 138 | 23.27 | wind | 7.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 139 | 23.27 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 143 | 23.28 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 148 | 23.29 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 171 | 23.32 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 218 | 23.35 | radiation | 40.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 221 | 23.35 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 275 | 23.38 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 277 | 23.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 280 | 23.39 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 285 | 23.39 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 286 | 23.39 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 288 | 23.39 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 292 | 23.40 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 300 | 23.40 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 306 | 23.41 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 320 | 23.41 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 329 | 23.41 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 373 | 23.43 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 394 | 23.43 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 421 | 23.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 430 | 23.44 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 455 | 23.45 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 458 | 23.45 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 478 | 23.45 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 495 | 23.45 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 496 | 23.45 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 502 | 23.46 | wind | 1.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 503 | 23.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 529 | 23.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 537 | 23.46 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 15 |
| 586 | 23.47 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 19 |
| 591 | 23.47 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 619 | 23.48 | humidity | 80.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 620 | 23.48 | humidity | 80.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 624 | 23.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 667 | 23.48 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 680 | 23.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 18 |
| 685 | 23.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 20 |
| 691 | 23.49 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 724 | 23.49 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 752 | 23.50 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 803 | 23.51 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 821 | 23.51 | radiation | 20.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 822 | 23.51 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 879 | 23.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 907 | 23.52 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 922 | 23.53 | radiation | 30.0 | 43200 | > th | dose independent | no | NA | NA |
| 925 | 23.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 931 | 23.53 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 7 | 9 |