BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0185700 Os05g0185700|AK064157
         (421 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49350.1  | chr1:18265070-18267034 FORWARD LENGTH=379          334   5e-92

>AT1G49350.1 | chr1:18265070-18267034 FORWARD LENGTH=379
          Length = 378

 Score =  334 bits (857), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 183/378 (48%), Positives = 245/378 (64%), Gaps = 11/378 (2%)

Query: 43  PVIIGGMVLDIHAKPSMQPHPGTTVPGMVKYVSGGVARNIAECICKLETRPFMISVVGND 102
           PVIIG ++LD+HAKPS  P  GTTVPG V +  GGVARN+A+CI KL   PFMI  +G D
Sbjct: 3   PVIIGALILDVHAKPSTTPISGTTVPGQVLFAPGGVARNVADCIFKLGITPFMIGTLGLD 62

Query: 103 MAGDFLLKYWRSAGLCTDGILQIDDVTTPIVSNVFDGSGELIAGVASVGAVEKFLSPSWI 162
              + LLK W+   L   GIL+ +D++TPIVS V+D +GE+ AGVA V AVE FL+P WI
Sbjct: 63  GPANVLLKEWK---LSMKGILRREDISTPIVSLVYDTNGEVAAGVAGVDAVENFLTPEWI 119

Query: 163 CQFRLHISTAPLLMLDANLSPDSLEAACKIAHESGVPVFFEPVSLAKGSRIAPIAKYITY 222
            +F  +IS+A LLM+DANLS  +LEA+CK+A ES VPV+FEPVS+ K  RIA IAKY+T 
Sbjct: 120 QRFEYNISSARLLMVDANLSSLALEASCKLAAESSVPVWFEPVSVTKSQRIASIAKYVTI 179

Query: 223 TSPNEIELVAMANSLSPPEKYTFVKMEQSKNKAKAVEYLFEMLSPAMFFLLEKGIKFLLV 282
            SPN+ EL+AMAN+L    K  F      +NK  ++E +F  L PA+  LL+ G+K ++V
Sbjct: 180 VSPNQDELIAMANALC--AKNLFHPFRSDENKL-SIEDMFRALKPAILVLLKNGVKVVIV 236

Query: 283 TLGSNGVFVCCKES--TSLMDQRKSEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCV 340
           TLGSNG  +C K +   +L   RK      S  + ++++     N   +L    S     
Sbjct: 237 TLGSNGALLCSKGNPKKALNIDRK---FLRSGEVFKRVQSVCSPNRFSELGSNRSPSLFA 293

Query: 341 FHFPAVSASVVSLTGAGDCFVGGVISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFS 400
            HFP + A V  LTGAGDC VGG +++L  GL ++QS+AVGIA AK++VES+ N+P +F 
Sbjct: 294 MHFPTIPAKVKKLTGAGDCLVGGTVASLSDGLDLIQSLAVGIASAKAAVESDDNVPPEFK 353

Query: 401 AATIADDARRTLLSAKMM 418
              I+ DA      AKM+
Sbjct: 354 LDLISGDAELVYNGAKML 371



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,921,684
Number of extensions: 374283
Number of successful extensions: 933
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 932
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 320
Effective length of database: 8,337,553
Effective search space: 2668016960
Effective search space used: 2668016960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)