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Os05g0182100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.98 (0.0251) R2 : 0.83
β1 : -1.42 (0.0915) R2dD : 0.0926 R2D : 0.0394
β2 : 1.93 (0.0719) R2dC : 0.349 R2C : 0.516
β3 : -1.08 (0.0654) R2dE : 0.133 R2E : 0.315
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.866 (0.0534) R2dN8 : 0.132 R2N8 : 0.0515
σ : 0.467
deviance : 100.71
__
_____
C
peak time of C : 8.21
E
wheather : radiation
threshold : 30
memory length : 18
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.53 0.462 9.98 -1.38 1.9 -1.1 -0.152 0.888 -0.869 8.17 28.3 19 -- --
99.12 0.464 9.99 -1.34 1.97 -1.15 -0.572 -- -0.87 8.29 39.04 18 -- --
96.58 0.458 9.98 -1.39 1.9 -1.1 -- 0.961 -0.869 8.16 28.18 18 -- --
100.71 0.467 9.98 -1.42 1.93 -1.08 -- -- -0.866 8.21 30 18 -- --
225.29 0.703 10 -1.31 -- -1.71 -- 1.01 -0.81 -- 11.29 20 -- --
118.73 0.511 9.95 -1.35 2.55 -- -0.829 -- -0.822 9.47 -- -- -- --
121.26 0.516 9.95 -1.38 2.56 -- -- -- -0.824 9.46 -- -- -- --
231.33 0.711 10 -1.34 -- -1.7 -- -- -0.815 -- 11.29 20 -- --
153.36 0.577 9.94 -- 2.06 -0.997 -- -- -0.703 8.57 40.71 18 -- --
505.14 1.05 10 -1.39 -- -- -- -- -0.816 -- -- -- -- --
171.19 0.612 9.92 -- 2.56 -- -- -- -0.671 9.51 -- -- -- --
276.73 0.777 9.99 -- -- -1.7 -- -- -0.673 -- 10 12 -- --
556.3 1.1 9.99 -- -- -- -- -- -0.661 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.43 radiation 2e+01 10 < th dose dependent rect. 7 13
4 90.68 radiation 1e+01 10 < th dose independent rect. 7 13
5 90.78 wind 1e+00 43200 < th dose dependent rect. 2 6
6 90.83 radiation 2e+01 90 < th dose dependent rect. 6 13
11 91.41 radiation 1e+01 90 < th dose independent rect. 6 13
13 91.67 wind 1e+00 43200 < th dose dependent rect. 4 3
14 91.89 wind 1e+00 43200 > th dose independent rect. 2 6
20 92.20 wind 1e+00 43200 > th dose independent rect. 4 3
22 92.27 wind 1e+00 43200 < th dose independent rect. 4 3
24 92.31 wind 1e+00 43200 < th dose independent rect. 2 6
40 93.33 radiation 3e+01 10 < th dose dependent rect. 9 11
62 94.44 wind 1e+00 43200 < th dose independent rect. 23 8
69 94.70 atmosphere 1e+03 90 > th dose independent rect. 5 14
73 94.80 radiation 2e+01 1440 < th dose independent rect. 11 1
86 95.07 atmosphere 1e+03 270 > th dose independent rect. 3 16
91 95.21 radiation 2e+01 10 < th dose dependent sin 21 NA
105 95.42 temperature 2e+01 14400 < th dose independent rect. 24 1
146 96.05 temperature 2e+01 14400 > th dose independent rect. 24 1
149 96.14 radiation 4e+01 90 < th dose dependent rect. 15 20
160 96.35 radiation 1e+01 90 < th dose independent rect. 13 6
161 96.35 wind 7e+00 43200 < th dose dependent rect. 5 1
166 96.43 wind 1e+00 43200 > th dose dependent rect. 5 1
175 96.52 radiation 4e+01 90 < th dose dependent rect. 13 22
193 96.73 radiation 1e+01 30 < th dose independent sin 22 NA
198 96.80 temperature 2e+01 14400 > th dose dependent rect. 8 1
203 96.87 radiation 3e+01 10 < th dose dependent rect. 13 23
216 97.01 atmosphere 1e+03 10 > th dose independent rect. 2 18
231 97.17 radiation 3e+01 10 < th dose dependent rect. 15 23
235 97.22 radiation 2e+01 14400 > th dose independent rect. 7 1
238 97.24 temperature 2e+01 14400 > th dose dependent rect. 7 7
247 97.28 radiation 3e+01 10 < th dose dependent no NA NA
281 97.44 temperature 2e+01 14400 > th dose dependent rect. 13 1
318 97.55 precipitation 1e-01 43200 > th dose dependent rect. 16 1
331 97.59 radiation 3e+01 30 < th dose dependent rect. 21 23
335 97.61 temperature 2e+01 14400 > th dose independent rect. 21 5
344 97.64 radiation 1e+01 10 < th dose independent rect. 12 8
365 97.76 temperature 2e+01 14400 > th dose dependent sin 2 NA
384 97.83 temperature 2e+01 14400 < th dose independent rect. 20 6
387 97.84 atmosphere 1e+03 270 > th dose independent rect. 14 18
393 97.86 temperature 3e+01 14400 < th dose dependent rect. 8 1
402 97.88 temperature 2e+01 14400 > th dose dependent rect. 6 15
421 97.92 precipitation 1e-01 43200 > th dose independent rect. 16 4
423 97.92 precipitation 1e-01 43200 > th dose dependent rect. 18 2
448 97.96 radiation 1e+01 90 < th dose independent rect. 15 4
455 97.97 radiation 1e+01 90 < th dose dependent rect. 13 6
468 98.00 wind 1e+00 14400 > th dose independent rect. 2 1
523 98.11 humidity 8e+01 4320 > th dose independent rect. 9 1
526 98.11 radiation 3e+01 10 < th dose dependent rect. 9 23
535 98.13 temperature 2e+01 14400 < th dose independent rect. 20 9
543 98.14 precipitation 1e-01 43200 < th dose independent rect. 16 1
544 98.14 precipitation 1e-01 43200 < th dose dependent rect. 16 1
549 98.15 wind 9e+00 43200 < th dose dependent rect. 7 1
613 98.24 temperature 2e+01 14400 > th dose independent rect. 20 10
623 98.24 radiation 2e+01 10 < th dose dependent rect. 11 23
641 98.27 precipitation 1e-01 43200 < th dose independent rect. 16 4
642 98.27 radiation 1e+01 270 > th dose independent rect. 6 8
658 98.27 precipitation 1e-01 43200 < th dose dependent rect. 16 4
661 98.28 radiation 4e+01 10 < th dose dependent rect. 2 18
667 98.29 precipitation 1e-01 43200 > th dose independent rect. 16 1
689 98.31 radiation 4e+01 270 < th dose independent rect. 3 15
702 98.32 humidity 8e+01 4320 < th dose independent rect. 9 1
717 98.34 radiation 1e+01 1440 < th dose dependent rect. 7 7
728 98.36 temperature 2e+01 14400 > th dose dependent no NA NA
747 98.39 temperature 2e+01 14400 > th dose dependent rect. 12 23
768 98.43 radiation 1e+01 270 > th dose independent rect. 8 6
774 98.44 atmosphere 1e+03 270 > th dose independent rect. 13 20
809 98.49 humidity 8e+01 43200 > th dose independent rect. 6 1
810 98.49 radiation 1e+01 270 < th dose independent rect. 22 21
830 98.52 radiation 1e+00 270 > th dose dependent rect. 18 20
835 98.53 radiation 1e+00 270 > th dose dependent rect. 5 9
883 98.58 wind 1e+00 43200 > th dose dependent rect. 7 1
932 98.64 wind 9e+00 43200 < th dose dependent rect. 4 4
941 98.65 radiation 3e+01 4320 > th dose dependent rect. 14 1