BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0182100 Os05g0182100|AK071095
(396 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39470.1 | chr4:18359735-18361165 REVERSE LENGTH=342 233 1e-61
AT5G02590.1 | chr5:583117-584097 FORWARD LENGTH=327 131 5e-31
AT3G18420.1 | chr3:6324771-6325721 REVERSE LENGTH=317 130 9e-31
AT3G53560.1 | chr3:19859954-19860976 REVERSE LENGTH=341 130 9e-31
AT2G37400.1 | chr2:15696365-15697366 REVERSE LENGTH=334 126 2e-29
AT3G09490.1 | chr3:2915636-2916640 FORWARD LENGTH=335 85 6e-17
>AT4G39470.1 | chr4:18359735-18361165 REVERSE LENGTH=342
Length = 341
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 165/219 (75%), Gaps = 1/219 (0%)
Query: 174 QMYMEILSRDPGDVDALKCALFAKMRRAEWGGALGFARRLREAEPGEVEWRLMEALLHEL 233
+M+ ++L +P +++A+K ++ KMRR + A+ + +L + EP EVEW+L+EAL +E
Sbjct: 120 KMFEKLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEALCYET 179
Query: 234 KGDLAEAERLFNEVLAEKPLLVRALHGLALCMHKRSEGPTVFEMLEKALQLAISGERVPE 293
G+L++A+RL+ ++L E+PLL+RALHGLA+ MHK + +VF+ML +A+++A G RV E
Sbjct: 180 MGELSKAKRLYKDILKEQPLLIRALHGLAMVMHK-THDTSVFDMLIEAMEVARQGNRVTE 238
Query: 294 ERNIKLLIAQMHVVKGQLDVASEKLQNLINEDPRDFRPHLCQGIVYALLDKKEEADELFD 353
ERNI++LI QMH+V+GQ + + Q ++N++PRDFRP+LCQGIVY+L+DKKEEA + F+
Sbjct: 239 ERNIQVLIGQMHIVEGQFEEGLKIFQQMVNDNPRDFRPYLCQGIVYSLMDKKEEAAQQFE 298
Query: 354 TYRSLVPDEFPDKSFISDVIQAARVESKDRLQKDFGSEF 392
Y SLVP EFP K F+ DV AA+ +S++RLQ F ++F
Sbjct: 299 IYWSLVPGEFPQKGFLDDVALAAQAKSRERLQNTFKAKF 337
>AT5G02590.1 | chr5:583117-584097 FORWARD LENGTH=327
Length = 326
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 7/208 (3%)
Query: 180 LSRDPGDVDALKCALFAKMRRAEWGGALGFARRLREAEPGEVEWRLMEALLHELKGDLAE 239
L+++P DV+AL+ + K + AL RL E +P E EWR+++A + GD
Sbjct: 122 LTKNPNDVEALQSLMKIKFQTKNIDHALEILNRLIEIQPEEQEWRILKAQVQTYGGDFDS 181
Query: 240 AERLFNEVLAEKPLLVRALHGLALCMHKRSEGPTVFEMLEKALQLAI---SGERVPEERN 296
A + F EVL++ P V A HGL + SE + +E + AI E + R+
Sbjct: 182 ATKGFEEVLSKDPFRVEAYHGLVMAY---SESESKLSEIESRINEAIEKCKKENKKDFRD 238
Query: 297 IKLLIAQMHVVKGQLDVASEKLQNLINEDPRDFRPHLCQGIVYALLDKKEEADELFDTYR 356
LLIAQ+ V+KG A Q L+ ++P+DFRP+LCQG++Y L+ KK+EA++ F +R
Sbjct: 239 FMLLIAQIRVIKGNPIEALRVYQELVKDEPKDFRPYLCQGLIYTLMKKKDEAEKQFAEFR 298
Query: 357 SLVPDEFPDKSFI-SDVIQAARVESKDR 383
LVP+ P K ++ ++V+ ++ +K++
Sbjct: 299 RLVPENHPYKEYLDANVLNTNKLFAKNQ 326
>AT3G18420.1 | chr3:6324771-6325721 REVERSE LENGTH=317
Length = 316
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 111/193 (57%), Gaps = 2/193 (1%)
Query: 178 EILSRDPGDVDALKCALFAKMRRAEWGGALGFARRLREAEPGEVEWR-LMEALLHELKGD 236
E+L P V+ L+ L K+ + E AL RL A+P E EW+ LM LL E+ G
Sbjct: 109 ELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKFLMARLLGEM-GR 167
Query: 237 LAEAERLFNEVLAEKPLLVRALHGLALCMHKRSEGPTVFEMLEKALQLAISGERVPEERN 296
A ++F E+L PL AL AL M + EG V + LE AL +A + V E R+
Sbjct: 168 PENARQMFEEILQRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAEAEYLVKEARD 227
Query: 297 IKLLIAQMHVVKGQLDVASEKLQNLINEDPRDFRPHLCQGIVYALLDKKEEADELFDTYR 356
++L+IAQ+H ++ +D A + + L EDP+DFRP+ C+G++Y+LLDK EA E F YR
Sbjct: 228 VRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNVEAKEQFAKYR 287
Query: 357 SLVPDEFPDKSFI 369
L P +F + ++
Sbjct: 288 ELSPKKFEVEGYL 300
>AT3G53560.1 | chr3:19859954-19860976 REVERSE LENGTH=341
Length = 340
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 178 EILSRDPGDVDALKCALFAKMRRAEWGGALGFARRLREAEPGEVEWRLMEALLHELKGDL 237
E L P DVDAL+ + K++ + A+ RL + EP E EW +++A + GDL
Sbjct: 121 EHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEEKEWPVLKANIFTYSGDL 180
Query: 238 AEAERLFNEVLAEKPLLVRALHGLALCMHKRS-EGPTVFEMLEKALQLAISGERVPEERN 296
A+ F E+LA+ PL V A HGL + + V +E+A+ + R+
Sbjct: 181 DLAKTGFEEILAKDPLRVEAYHGLLMAYSDAGLDLKEVESRIEEAMLKCKKENNQNDFRD 240
Query: 297 IKLLIAQMHVVKGQLDVASEKLQNLINEDPRDFRPHLCQGIVYALLDKKEEADELFDTYR 356
KLL+AQ+ V++G+ A + Q L+ E+PRDFRP+LCQGI+Y LL KK++A+E FD +R
Sbjct: 241 FKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGIIYTLLKKKDKAEEQFDNFR 300
Query: 357 SLVPDEFPDKSFISDVIQAARVESKDRLQKDFGSE 391
LVP P + + D + A ++ S ++ Q++ E
Sbjct: 301 KLVPKNHPYREYFMDNMIATKLFS-EKAQREMAEE 334
>AT2G37400.1 | chr2:15696365-15697366 REVERSE LENGTH=334
Length = 333
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 180 LSRDPGDVDALKCALFAKMRRAEWGGALGFARRLREAEPGEVEWRLMEALLHELKGDLAE 239
L+ P DV+AL+ + +++ + A+ RL E EP E EW +++A + GDL
Sbjct: 123 LASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEPEEKEWPMLKANIFSYSGDLES 182
Query: 240 AERLFNEVLAEKPLLVRALHGLALCMHKRSEGPTVFEM-LEKALQLAISGERVPEERNIK 298
A+ F E+L + PL V A HGL + + E +E+A+ + + R+ K
Sbjct: 183 AKTGFEEILVKDPLRVEAYHGLVMAYSDSGDDLNAVEKRIEEAMVRCKKEKNRKDLRDFK 242
Query: 299 LLIAQMHVVKGQLDVASEKLQNLINEDPRDFRPHLCQGIVYALLDKKEEADELFDTYRSL 358
LL+AQ+ V++G+ + A + + L+ E+PRDFRP+LCQGI+Y +L K+ EA++ F+ +R L
Sbjct: 243 LLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQGIIYTVLKKENEAEKQFEKFRRL 302
Query: 359 VPDEFPDKSFISDVIQAARV 378
VP P + + D + A+++
Sbjct: 303 VPKNHPYREYFMDNMVASKL 322
>AT3G09490.1 | chr3:2915636-2916640 FORWARD LENGTH=335
Length = 334
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 5/190 (2%)
Query: 180 LSRDPGDVDALKCALFAKMRRAEWGGALGFARRLREAEPGEVEWRLMEALLHELKGDLAE 239
L DV+AL K + + A+ F RL E EP E +W M+A + G
Sbjct: 106 LETQSNDVNALSLLTEIKFKSDKHEQAIVFLDRLIEIEPYERKWPAMKARILSYHGKSES 165
Query: 240 AERLFNEVLAEKPLLVRALHGLALCMHKRSEGPTVFEM---LEKALQLAISGERVPEERN 296
A F E+L + P+ V A H L M + P + E+ + K ++ ++ E
Sbjct: 166 AIEAFEEILEKDPIRVDAYH--YLVMEYYNSKPKLTEIEKRINKVIRRCKKEKKTKEILG 223
Query: 297 IKLLIAQMHVVKGQLDVASEKLQNLINEDPRDFRPHLCQGIVYALLDKKEEADELFDTYR 356
++LIAQ+ ++G+ A + L+ EDP DF +L QG+VY L++K EEA + F+
Sbjct: 224 FRMLIAQIRFIEGKSVEAIRICEELVKEDPNDFTIYLFQGVVYTLMNKGEEAAKQFEHVA 283
Query: 357 SLVPDEFPDK 366
++P P +
Sbjct: 284 RVIPRNHPSR 293
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,462,880
Number of extensions: 200140
Number of successful extensions: 619
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 6
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)