Os05g0180400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os05g0180400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.56 | 0.441 | 3.65 | 1.36 | 0.166 | -69.7 | -0.342 | -143 | 0.0737 | 4.94 | 15 | 90 | -- | -- |
| 89.85 | 0.445 | 3.05 | 0.102 | 0.17 | -1.77 | -0.258 | -- | 0.0696 | 5.4 | 15 | 90 | -- | -- |
| 89.73 | 0.441 | 3.65 | 1.37 | 0.174 | -69.3 | -- | -143 | 0.0754 | 5.99 | 15.03 | 94 | -- | -- |
| 89.74 | 0.441 | 3.05 | 0.129 | 0.169 | -1.8 | -- | -- | 0.0721 | 5.59 | 14.7 | 98 | -- | -- |
| 91.28 | 0.445 | 3.64 | 1.36 | -- | -69.3 | -- | -143 | 0.0804 | -- | 15.02 | 90 | -- | -- |
| 95.62 | 0.458 | 3.06 | 0.0249 | 0.15 | -- | -0.573 | -- | 0.0503 | 3.66 | -- | -- | -- | -- |
| 96.23 | 0.459 | 3.06 | 0.0343 | 0.174 | -- | -- | -- | 0.0533 | 5.51 | -- | -- | -- | -- |
| 91.26 | 0.445 | 3.05 | 0.125 | -- | -1.81 | -- | -- | 0.0794 | -- | 14.7 | 98 | -- | -- |
| 90.07 | 0.442 | 3.05 | -- | 0.175 | -1.75 | -- | -- | 0.0613 | 6.02 | 14.78 | 94 | -- | -- |
| 97.81 | 0.462 | 3.06 | 0.0401 | -- | -- | -- | -- | 0.0575 | -- | -- | -- | -- | -- |
| 96.26 | 0.459 | 3.06 | -- | 0.175 | -- | -- | -- | 0.0495 | 5.5 | -- | -- | -- | -- |
| 91.65 | 0.446 | 3.06 | -- | -- | -1.75 | -- | -- | 0.0647 | -- | 14.7 | 94 | -- | -- |
| 97.85 | 0.462 | 3.06 | -- | -- | -- | -- | -- | 0.0531 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.92 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 1 |
| 4 | 84.24 | temperature | 15 | 30 | > th | dose independent | rect. | 3 | 23 |
| 6 | 84.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 7 | 84.70 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 8 | 84.75 | wind | 1 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 10 | 84.82 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 1 |
| 13 | 86.10 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 4 |
| 17 | 86.84 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 21 | 87.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 24 | 87.11 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 30 | 87.45 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 1 |
| 35 | 87.81 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 36 | 87.85 | temperature | 15 | 10 | > th | dose independent | rect. | 5 | 23 |
| 43 | 88.25 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 51 | 88.61 | temperature | 15 | 720 | > th | dose independent | rect. | 13 | 10 |
| 55 | 88.66 | temperature | 15 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 56 | 88.67 | temperature | 15 | 720 | > th | dose independent | rect. | 10 | 14 |
| 57 | 88.68 | temperature | 15 | 30 | > th | dose independent | rect. | 5 | 21 |
| 58 | 88.69 | temperature | 15 | 720 | > th | dose independent | rect. | 5 | 19 |
| 61 | 88.73 | temperature | 15 | 720 | > th | dose independent | rect. | 8 | 16 |
| 73 | 88.81 | temperature | 15 | 270 | > th | dose independent | rect. | 12 | 23 |
| 75 | 88.83 | temperature | 15 | 720 | > th | dose independent | rect. | 16 | 8 |
| 79 | 88.85 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 85 | 88.88 | temperature | 15 | 10 | > th | dose independent | rect. | 14 | 12 |
| 87 | 88.90 | temperature | 15 | 90 | > th | dose independent | sin | 9 | NA |
| 88 | 88.90 | temperature | 15 | 90 | > th | dose independent | sin | 17 | NA |
| 89 | 88.90 | temperature | 15 | 270 | > th | dose independent | sin | 23 | NA |
| 123 | 89.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 149 | 89.22 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 165 | 89.28 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 167 | 89.29 | temperature | 15 | 10 | > th | dose independent | sin | 7 | NA |
| 199 | 89.29 | temperature | 15 | 10 | > th | dose independent | sin | 1 | NA |
| 217 | 89.30 | temperature | 15 | 270 | > th | dose independent | rect. | 10 | 23 |
| 219 | 89.32 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 222 | 89.33 | temperature | 15 | 10 | > th | dose independent | rect. | 16 | 10 |
| 225 | 89.34 | temperature | 15 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 271 | 89.51 | temperature | 15 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 275 | 89.53 | humidity | 90 | 270 | < th | dose independent | rect. | 1 | 1 |
| 276 | 89.53 | temperature | 15 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 286 | 89.54 | temperature | 15 | 720 | < th | dose dependent | sin | 17 | NA |
| 295 | 89.55 | temperature | 20 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 297 | 89.55 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 298 | 89.56 | temperature | 15 | 90 | > th | dose independent | no | NA | NA |
| 300 | 89.56 | temperature | 15 | 90 | < th | dose independent | sin | 7 | NA |
| 348 | 89.56 | temperature | 15 | 90 | < th | dose independent | no | NA | NA |
| 350 | 89.56 | temperature | 15 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 352 | 89.56 | temperature | 15 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 355 | 89.56 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 486 | 89.56 | temperature | 15 | 270 | < th | dose independent | rect. | 24 | 10 |
| 938 | 89.56 | temperature | 15 | 90 | < th | dose dependent | sin | 7 | NA |
| 988 | 89.56 | temperature | 15 | 90 | < th | dose dependent | no | NA | NA |
| 990 | 89.56 | temperature | 15 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 992 | 89.56 | temperature | 15 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 995 | 89.56 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 1 | 1 |