BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0180400 Os05g0180400|J065039N21
         (656 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16000.1  | chr3:5431041-5433613 REVERSE LENGTH=727            267   1e-71

>AT3G16000.1 | chr3:5431041-5433613 REVERSE LENGTH=727
          Length = 726

 Score =  267 bits (683), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 197/623 (31%), Positives = 359/623 (57%), Gaps = 23/623 (3%)

Query: 30  NPLAGLLNAIAVIASGVFAGLFGASQREKEALQSTVSTMEIKLAENEAAMSMLRENYEKQ 89
           NP   LLN + + ++GV   L+  ++++ +A + T+ +++ +L + E A+ +  +++E +
Sbjct: 123 NPFLALLNGLGIFSAGVLGALYALARQDTKAAEETIESLKNQLKDRERALVLKEKDFEAK 182

Query: 90  IWNEHAEQKKQARMFQEKEASLLDQLTLTKRTVTSLNEEVRREKELVEQLKQEIHRLKSS 149
           + +E  E+KK+    +E++ SL++QL   K  VT L  E+  EK+L E+LK +I  L++S
Sbjct: 183 LQHEQEERKKEVEKAKEEQLSLINQLNSAKDLVTELGRELSSEKKLCEKLKDQIESLENS 242

Query: 150 IAQAEDDKHVFEGKLREKLEALDSLQDKVNLLSQEVNAKEEAIREXXXXXXXKEEDYQKL 209
           +++A +DK   E KLREKL+ ++ LQD++NLLS E+   EE  +        KE + ++L
Sbjct: 243 LSKAGEDKEALETKLREKLDLVEGLQDRINLLSLELKDSEEKAQRFNASLAKKEAELKEL 302

Query: 210 QLIYNETEASLEYADSKIEQLEEGYSATKDDLNSKMCSIDSLNKEVQTLYTAQTGAEEKI 269
             IY +T   L  A  +I+Q +E    T+ +L+SK  +I+ LN  + TL   +    +K+
Sbjct: 303 NSIYTQTSRDLAEAKLEIKQQKEELIRTQSELDSKNSAIEELNTRITTLVAEKESYIQKL 362

Query: 270 SELKKQYADLAAASELRASCDSELLIEKDNLLNQLEEKLSAALSDTSKNKIIIAELNNEL 329
             + K Y+ L   SE +A+ D+EL+  K+  + QL E L  AL D +K+K  +A+L  + 
Sbjct: 363 DSISKDYSALKLTSETQAAADAELISRKEQEIQQLNENLDRALDDVNKSKDKVADLTEKY 422

Query: 330 DTNRTMLDNEAEAHKKLSEILQSTEGALTDYRDKVFNLSEELNRVKISNQQLITQITKLT 389
           + ++ MLD E    K L   L+ T+  L   RD+V +L   L+  +    +L +++  + 
Sbjct: 423 EDSKRMLDIELTTVKNLRHELEGTKKTLQASRDRVSDLETMLDESRALCSKLESELAIVH 482

Query: 390 DESNIAKQVLTNKIAEAEAVSKVLSDELASVRDVLQKTQEKLDVTSNQLVSTMEAREDLN 449
           +E   AK+     +   +  +++ + ELA  +D+ ++ +++L+  +++L  +    + L 
Sbjct: 483 EEWKEAKERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQ 542

Query: 450 KELLDAYKKLESATDELVRERKINATLNRELEALVEQSIVESEARQALQADLDEVTNSQK 509
           KEL++ YKK+E++  EL  E+K   +LN+E++ + +Q ++E EAR++L+ DL+E   S  
Sbjct: 543 KELVEIYKKVETSNKELEEEKKTVLSLNKEVKGMEKQILMEREARKSLETDLEEAVKSLD 602

Query: 510 EVDESTQFLSERLDSANSRISSIEQEKEMLSEALEQQKRSTMEAQKDMEDAQNLMRMIGT 569
           E++++T  LS  L+  N+  S++E EKE+L  +L + K ++ EA++++EDA  L+  +G 
Sbjct: 603 EMNKNTSILSRELEKVNTHASNLEDEKEVLQRSLGEAKNASKEAKENVEDAHILVMSLGK 662

Query: 570 ERENFETMSKKLEEELATAKGEILRLRRQISASGYLRTELAETSVTSNTSQPEQDVNDPD 629
           ERE  E   KKLEE+L +AKGEILR+R                      SQP+  V   +
Sbjct: 663 EREVLEKKVKKLEEDLGSAKGEILRMR----------------------SQPDS-VKAVN 699

Query: 630 QSSNNTGAGDTRSPTRIYRRRKT 652
            + N   + +T +  ++ RRRK+
Sbjct: 700 STDNKEKSDNTVTVKKVVRRRKS 722



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.121    0.300 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,106,736
Number of extensions: 443296
Number of successful extensions: 4192
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 3650
Number of HSP's successfully gapped: 238
Length of query: 656
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 551
Effective length of database: 8,227,889
Effective search space: 4533566839
Effective search space used: 4533566839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 115 (48.9 bits)