Os05g0168400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0168400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.54 | 0.179 | 9.84 | -0.366 | 0.222 | -0.847 | -0.316 | 0.365 | -0.0501 | 9.54 | 20.97 | 1206 | -- | -- |
| 14.6 | 0.178 | 9.83 | -0.337 | 0.233 | -0.951 | -0.315 | -- | -0.0425 | 9.58 | 20.74 | 1141 | -- | -- |
| 14.88 | 0.18 | 9.84 | -0.373 | 0.219 | -0.883 | -- | 0.301 | -0.048 | 9.44 | 20.8 | 1241 | -- | -- |
| 14.94 | 0.18 | 9.83 | -0.354 | 0.224 | -0.972 | -- | -- | -0.0439 | 9.51 | 20.7 | 1215 | -- | -- |
| 17.3 | 0.194 | 9.84 | -0.38 | -- | -0.869 | -- | 0.546 | -0.0502 | -- | 20.6 | 1499 | -- | -- |
| 21.5 | 0.217 | 9.81 | -0.112 | 0.209 | -- | -0.324 | -- | 0.0553 | 8.76 | -- | -- | -- | -- |
| 21.85 | 0.219 | 9.81 | -0.123 | 0.209 | -- | -- | -- | 0.0553 | 8.81 | -- | -- | -- | -- |
| 17.43 | 0.194 | 9.84 | -0.369 | -- | -1.04 | -- | -- | -0.0494 | -- | 20.53 | 1474 | -- | -- |
| 17.66 | 0.196 | 9.82 | -- | 0.229 | -0.709 | -- | -- | 0.0154 | 9.45 | 20.7 | 1129 | -- | -- |
| 24.33 | 0.23 | 9.82 | -0.123 | -- | -- | -- | -- | 0.0568 | -- | -- | -- | -- | -- |
| 22.24 | 0.221 | 9.81 | -- | 0.209 | -- | -- | -- | 0.069 | 8.85 | -- | -- | -- | -- |
| 20.3 | 0.21 | 9.82 | -- | -- | -0.768 | -- | -- | 0.0179 | -- | 20.25 | 1393 | -- | -- |
| 24.73 | 0.232 | 9.81 | -- | -- | -- | -- | -- | 0.0705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.69 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 8 | 14.75 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 12 | 14.78 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 17 | 14.79 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 27 | 14.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 36 | 14.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 47 | 14.86 | temperature | 20 | 1440 | > th | dose independent | sin | 20 | NA |
| 49 | 14.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 54 | 14.87 | temperature | 20 | 1440 | < th | dose independent | sin | 20 | NA |
| 61 | 14.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 77 | 14.89 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 20 |
| 96 | 14.91 | temperature | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 97 | 14.91 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 115 | 14.92 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 133 | 14.93 | temperature | 20 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 141 | 14.94 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 148 | 14.95 | temperature | 20 | 1440 | < th | dose dependent | sin | 0 | NA |
| 234 | 15.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 297 | 15.10 | temperature | 20 | 1440 | < th | dose dependent | rect. | 14 | 12 |
| 368 | 15.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 476 | 15.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 554 | 15.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 719 | 15.34 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 18 |
| 722 | 15.35 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 758 | 15.37 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 770 | 15.38 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 780 | 15.38 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 797 | 15.39 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 798 | 15.39 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 23 |
| 799 | 15.39 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 814 | 15.40 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 829 | 15.41 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 865 | 15.43 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 867 | 15.43 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 23 |
| 885 | 15.44 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 938 | 15.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 950 | 15.47 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 2 |