BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0168400 Os05g0168400|AK106195
         (227 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51610.1  | chr3:19139715-19141986 REVERSE LENGTH=231          288   1e-78

>AT3G51610.1 | chr3:19139715-19141986 REVERSE LENGTH=231
          Length = 230

 Score =  288 bits (738), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 158/195 (81%), Gaps = 1/195 (0%)

Query: 32  YRPGDIVPMLRSGQYHGSRSVWFDVVGRHCPSFAVNHEVMMPIPKPTGFTGADPYKITFQ 91
           YRPGDIV M + GQYH SR+ W DV+G+HCP FAVN EV++PI KP G+TG DPYKI FQ
Sbjct: 34  YRPGDIVRMSKMGQYHSSRTTWHDVIGKHCPIFAVNREVLIPIAKPIGYTGTDPYKIKFQ 93

Query: 92  IGHEKFHLPWLYVINRKSSEVPMIDFHLKYSGNDLLGVTAKVVDMPHIYVEHHPDIRKNF 151
           +G EKF + WL VINRKSSEVPMID +L+YSG DLLGVTA+V+DMPH Y+  HP+IRK F
Sbjct: 94  VGSEKFLIHWLLVINRKSSEVPMIDVNLRYSGGDLLGVTAQVIDMPHSYLNTHPEIRKQF 153

Query: 152 WDQQNWPKYVLVRYTWEEQSEIDVPGGFYVLFGSGLVLSFILAIYVLQSSQEKLTRFVRE 211
           WD Q+WPK+VLVRYTW+EQSEIDV  GFYVLFGS L  SF+L+IYVLQSS+EKL RFVRE
Sbjct: 154 WDPQHWPKHVLVRYTWKEQSEIDVSSGFYVLFGSALTFSFVLSIYVLQSSREKLARFVRE 213

Query: 212 A-VNDSSLPEGGFAK 225
             V  SS+  G F K
Sbjct: 214 TVVESSSMNVGEFGK 228



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,684,274
Number of extensions: 204422
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,502,049
Effective search space: 1122270468
Effective search space used: 1122270468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)