Os05g0159700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0159700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.67 | 0.45 | 10.9 | 1.43 | 0.00941 | -1.42 | -0.345 | 1.92 | 0.4 | 14.6 | 20.44 | 1442 | -- | -- |
| 97.01 | 0.459 | 10.9 | 1.21 | 0.0102 | -1.6 | -0.4 | -- | 0.323 | 13.4 | 16.1 | 5679 | -- | -- |
| 92.05 | 0.447 | 10.9 | 1.44 | 0.0387 | -1.45 | -- | 2.05 | 0.4 | 0.298 | 20.59 | 1412 | -- | -- |
| 96.43 | 0.457 | 10.9 | 1.13 | 0.0186 | -1.64 | -- | -- | 0.261 | 23.5 | 16.51 | 4338 | -- | -- |
| 92.06 | 0.447 | 10.9 | 1.46 | -- | -1.42 | -- | 2.08 | 0.405 | -- | 20.72 | 1430 | -- | -- |
| 150.5 | 0.575 | 11 | 0.356 | 0.112 | -- | -0.328 | -- | -0.0756 | 15.6 | -- | -- | -- | -- |
| 150.8 | 0.575 | 11 | 0.351 | 0.114 | -- | -- | -- | -0.0774 | 16.4 | -- | -- | -- | -- |
| 96.46 | 0.457 | 11 | 1.12 | -- | -1.63 | -- | -- | 0.258 | -- | 16.49 | 4355 | -- | -- |
| 112.17 | 0.493 | 11 | -- | 0.0366 | -1.07 | -- | -- | 0.0931 | 22.2 | 20.83 | 1442 | -- | -- |
| 151.5 | 0.575 | 11 | 0.346 | -- | -- | -- | -- | -0.0804 | -- | -- | -- | -- | -- |
| 154.04 | 0.581 | 11 | -- | 0.108 | -- | -- | -- | -0.116 | 16.4 | -- | -- | -- | -- |
| 112.26 | 0.493 | 11 | -- | -- | -1.06 | -- | -- | 0.0927 | -- | 20.8 | 1448 | -- | -- |
| 154.66 | 0.58 | 11 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 8 | 88.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 10 | 88.63 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 19 | 89.17 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 40 | 90.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 43 | 90.61 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 49 | 90.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 59 | 91.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 71 | 91.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 72 | 91.20 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 83 | 91.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 186 | 91.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 210 | 91.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 214 | 91.83 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 229 | 91.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 251 | 91.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 284 | 92.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 323 | 92.21 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 388 | 92.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 399 | 92.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 435 | 92.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 481 | 92.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 651 | 93.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 674 | 93.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 14 |
| 681 | 93.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 12 |
| 683 | 93.28 | temperature | 25 | 4320 | < th | dose independent | sin | 18 | NA |
| 720 | 93.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 21 |
| 730 | 93.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 811 | 93.42 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 975 | 93.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 20 |
| 995 | 93.58 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |