BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0159700 Os05g0159700|Os05g0159700
         (416 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48110.1  | chr1:17770339-17772806 REVERSE LENGTH=640           62   5e-10
AT1G79270.1  | chr1:29816157-29818811 FORWARD LENGTH=529           62   5e-10
AT3G17330.1  | chr3:5917253-5919458 REVERSE LENGTH=596             53   2e-07

>AT1G48110.1 | chr1:17770339-17772806 REVERSE LENGTH=640
          Length = 639

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 42/65 (64%)

Query: 160 QYNWADLAVVYEEAIFFVLQAYNEEVIHLSMRYDMLWTCSAGNHALDDAFRLAHQICAQK 219
           QYN  DL + Y  A FFV+++Y+E+ +H S++Y++  +   GN  L  A+  A +I  +K
Sbjct: 308 QYNKEDLRIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEK 367

Query: 220 NCKCP 224
           +C+CP
Sbjct: 368 SCECP 372



>AT1G79270.1 | chr1:29816157-29818811 FORWARD LENGTH=529
          Length = 528

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 160 QYNWADLAVVYEEAIFFVLQAYNEEVIHLSMRYDMLWTCSAGNHALDDAFRLAHQICAQK 219
           QYN       YEEAIFFV+++Y+E+ IH S++Y++  +   GN  LD A++ + +  A K
Sbjct: 308 QYNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQKKAADK 367

Query: 220 NCKCP 224
           + KCP
Sbjct: 368 SGKCP 372



>AT3G17330.1 | chr3:5917253-5919458 REVERSE LENGTH=596
          Length = 595

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 160 QYNWADLAVVYEEAIFFVLQAYNEEVIHLSMRYDMLWTCSAGNHALDDAFRLAHQICAQK 219
           +YN  D ++ Y +A FFV+++Y+E+ +H S++Y +  +   GN  L   +  A +I  +K
Sbjct: 257 RYNKEDFSIEYSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEK 316

Query: 220 NCKCP 224
           + +CP
Sbjct: 317 SRECP 321



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,696,527
Number of extensions: 354078
Number of successful extensions: 954
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 3
Length of query: 416
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,337,553
Effective search space: 2626329195
Effective search space used: 2626329195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)