Os05g0150500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0150500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 227.92 | 0.709 | 7.38 | 3.05 | 0.557 | -1.84 | -0.0341 | -1.92 | 0.305 | 10 | 21.8 | 1577 | -- | -- |
| 235.08 | 0.714 | 7.31 | 3.47 | 0.559 | -1.65 | -0.00925 | -- | 0.441 | 9.85 | 22.2 | 1517 | -- | -- |
| 227.92 | 0.703 | 7.38 | 3.05 | 0.557 | -1.84 | -- | -1.92 | 0.305 | 10 | 21.8 | 1577 | -- | -- |
| 235.08 | 0.714 | 7.31 | 3.48 | 0.555 | -1.65 | -- | -- | 0.443 | 9.83 | 22.19 | 1517 | -- | -- |
| 243.09 | 0.726 | 7.38 | 2.88 | -- | -1.53 | -- | -1.54 | 0.31 | -- | 22.23 | 973 | -- | -- |
| 333.84 | 0.857 | 7.44 | 2.87 | 0.561 | -- | -0.0955 | -- | -0.101 | 10.2 | -- | -- | -- | -- |
| 333.87 | 0.856 | 7.44 | 2.86 | 0.561 | -- | -- | -- | -0.102 | 10.2 | -- | -- | -- | -- |
| 250.59 | 0.737 | 7.34 | 3.34 | -- | -1.44 | -- | -- | 0.412 | -- | 22.47 | 840 | -- | -- |
| 520.48 | 1.06 | 7.45 | -- | 0.495 | -0.811 | -- | -- | -0.17 | 9.32 | 22.4 | 1218 | -- | -- |
| 352.97 | 0.878 | 7.45 | 2.85 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 549.68 | 1.1 | 7.51 | -- | 0.551 | -- | -- | -- | -0.42 | 9.79 | -- | -- | -- | -- |
| 526.06 | 1.07 | 7.46 | -- | -- | -0.9 | -- | -- | -0.142 | -- | 22.34 | 757 | -- | -- |
| 567.77 | 1.11 | 7.52 | -- | -- | -- | -- | -- | -0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 230.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 232.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 8 | 236.68 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 10 | 237.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 14 | 237.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 40 | 238.33 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 91 | 240.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 102 | 240.58 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 128 | 241.44 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 140 | 241.71 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 142 | 241.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 176 | 242.48 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 203 | 242.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 206 | 242.94 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 215 | 243.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 227 | 243.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 232 | 243.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 252 | 243.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 256 | 243.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 261 | 243.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 266 | 243.69 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 314 | 244.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 337 | 244.20 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 354 | 244.33 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 520 | 245.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 555 | 245.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 578 | 246.21 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 596 | 246.31 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 614 | 246.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 665 | 247.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 733 | 247.60 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 748 | 247.72 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 835 | 248.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |