Os05g0149000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pectinesterase inhibitor domain containing protein.
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Os05g0149000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pectinesterase inhibitor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.71 | 0.679 | 7.59 | -0.309 | 3.39 | -3.49 | -1.65 | 0.568 | -0.28 | 8.09 | 13.46 | 31 | 7.95 | 21 |
| 208.74 | 0.673 | 7.59 | -0.373 | 3.4 | -3.46 | -1.69 | -- | -0.302 | 8.06 | 13.13 | 34 | 7.93 | 21 |
| 215.89 | 0.684 | 7.59 | -0.342 | 3.34 | -3.51 | -- | 1.09 | -0.293 | 8.08 | 12.37 | 42 | 7.89 | 21 |
| 216.87 | 0.686 | 7.59 | -0.381 | 3.39 | -3.49 | -- | -- | -0.287 | 8.07 | 13.02 | 41 | 7.87 | 21.1 |
| 377.88 | 0.905 | 7.73 | -0.927 | -- | -6.18 | -- | 3.48 | -0.707 | -- | 2 | 283 | 7.12 | 19.6 |
| 408.39 | 0.947 | 7.65 | -0.999 | 4.55 | -- | -1.43 | -- | -0.634 | 7 | -- | -- | -- | -- |
| 413.75 | 0.953 | 7.65 | -1.03 | 4.55 | -- | -- | -- | -0.631 | 6.99 | -- | -- | -- | -- |
| 257.5 | 0.747 | 7.75 | -0.479 | -- | -5.8 | -- | -- | -0.491 | -- | -9.07 | 403 | 6.78 | 18.4 |
| 220.79 | 0.692 | 7.59 | -- | 3.39 | -3.6 | -- | -- | -0.246 | 8.12 | 13.37 | 46 | 7.83 | 21.1 |
| 1500.52 | 1.81 | 7.75 | -0.934 | -- | -- | -- | -- | -0.547 | -- | -- | -- | -- | -- |
| 441.52 | 0.983 | 7.62 | -- | 4.54 | -- | -- | -- | -0.516 | 7 | -- | -- | -- | -- |
| 260.35 | 0.752 | 7.71 | -- | -- | -5.91 | -- | -- | -0.42 | -- | -3.118 | 401 | 7.03 | 17.8 |
| 1523.54 | 1.82 | 7.72 | -- | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 211.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 23 | 235.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 24 | 235.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 47 | 242.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 70 | 250.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 81 | 252.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 86 | 252.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 186 | 265.11 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 195 | 265.86 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 234 | 269.94 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 249 | 270.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 313 | 274.36 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 342 | 276.07 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 425 | 279.53 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 17 |
| 460 | 280.71 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 512 | 282.31 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 613 | 285.43 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 631 | 286.01 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 635 | 286.18 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 637 | 286.22 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 648 | 286.42 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 731 | 288.67 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 740 | 288.94 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 741 | 288.95 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 775 | 289.66 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 838 | 291.18 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 853 | 291.44 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 941 | 293.15 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 9 |