Os05g0143200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0143200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.73 | 0.543 | 5.55 | 0.0258 | 0.301 | -1.06 | -0.513 | -1.01 | -0.208 | 23.1 | 23 | 2587 | -- | -- |
| 135.59 | 0.542 | 5.59 | -0.321 | 0.296 | -1.09 | -0.351 | -- | -0.264 | 23.2 | 22.5 | 2489 | -- | -- |
| 133.83 | 0.539 | 5.55 | 0.0116 | 0.335 | -1.07 | -- | -0.899 | -0.162 | 23.7 | 22.6 | 2100 | -- | -- |
| 136.24 | 0.544 | 5.59 | -0.327 | 0.303 | -1.09 | -- | -- | -0.272 | 23.4 | 22.6 | 2488 | -- | -- |
| 139.42 | 0.55 | 5.54 | 0.0699 | -- | -1.13 | -- | -1.04 | -0.186 | -- | 22.54 | 2273 | -- | -- |
| 179.82 | 0.629 | 5.49 | 0.109 | 0.409 | -- | -0.337 | -- | 0.14 | 23.7 | -- | -- | -- | -- |
| 180.31 | 0.629 | 5.49 | 0.122 | 0.41 | -- | -- | -- | 0.141 | 23.8 | -- | -- | -- | -- |
| 141.59 | 0.554 | 5.58 | -0.313 | -- | -1.12 | -- | -- | -0.27 | -- | 22.6 | 2281 | -- | -- |
| 138.06 | 0.547 | 5.57 | -- | 0.324 | -1 | -- | -- | -0.203 | 24 | 22.5 | 2100 | -- | -- |
| 190.9 | 0.646 | 5.48 | 0.134 | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
| 180.7 | 0.629 | 5.5 | -- | 0.412 | -- | -- | -- | 0.128 | 23.8 | -- | -- | -- | -- |
| 143.98 | 0.559 | 5.57 | -- | -- | -1.05 | -- | -- | -0.225 | -- | 22.67 | 2312 | -- | -- |
| 191.38 | 0.646 | 5.49 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 4 | 133.35 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 5 | 133.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 11 | 133.54 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 23 | 133.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 45 | 133.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 75 | 134.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 11 |
| 129 | 134.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 365 | 135.87 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 368 | 135.89 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 375 | 135.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 384 | 135.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 558 | 136.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 679 | 137.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |