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Os05g0129300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic/leucine zipper protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0253) R2 : 0.33
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.731 (0.0603) R2dC : 0.217 R2C : 0.189
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.461 (0.0533) R2dN8 : 0.142 R2N8 : 0.114
σ : 0.477
deviance : 104.14
__
_____
C
peak time of C : 0.365
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.82 0.443 13.6 0.215 0.107 0.81 -1.04 -0.727 0.508 8.7 21.45 15 -- --
89.6 0.441 13.6 0.211 0.028 0.759 -0.845 -- 0.511 6.25 22.08 19 -- --
90.61 0.443 13.6 0.22 0.0913 0.816 -- -0.167 0.515 9.37 22.09 15 -- --
90.67 0.443 13.6 0.203 0.127 0.836 -- -- 0.51 10.3 22.02 15 -- --
90.93 0.444 13.6 0.201 -- 0.777 -- -0.147 0.508 -- 24.56 15 -- --
103.32 0.477 13.6 0.177 0.729 -- 0.017 -- 0.48 0.348 -- -- -- --
103.32 0.476 13.6 0.176 0.729 -- -- -- 0.48 0.352 -- -- -- --
91.03 0.444 13.6 0.206 -- 0.773 -- -- 0.508 -- 24.34 15 -- --
91.78 0.446 13.6 -- 0.132 0.837 -- -- 0.488 10 21.67 15 -- --
136.72 0.546 13.6 0.2 -- -- -- -- 0.492 -- -- -- -- --
104.14 0.477 13.6 -- 0.731 -- -- -- 0.461 0.365 -- -- -- --
92.15 0.447 13.6 -- -- 0.771 -- -- 0.485 -- 24.12 15 -- --
137.78 0.548 13.6 -- -- -- -- -- 0.47 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.74 humidity 80 90 < th dose independent rect. 23 18
5 84.05 humidity 80 10 > th dose independent rect. 6 14
6 84.13 humidity 80 10 < th dose independent rect. 9 9
7 84.24 humidity 50 10 > th dose dependent rect. 6 14
8 84.25 humidity 80 90 < th dose independent rect. 3 14
10 84.41 humidity 80 90 > th dose independent rect. 5 14
12 84.57 humidity 70 10 > th dose dependent rect. 6 14
15 84.74 temperature 25 270 < th dose independent rect. 12 17
17 84.88 humidity 80 10 < th dose independent rect. 23 19
18 84.97 humidity 80 10 < th dose independent rect. 24 17
25 85.08 humidity 90 90 < th dose dependent rect. 20 21
27 85.10 humidity 80 10 < th dose independent sin 0 NA
29 85.10 humidity 90 10 < th dose dependent rect. 20 22
30 85.13 temperature 20 270 > th dose independent rect. 3 4
39 85.36 temperature 25 270 < th dose independent rect. 11 19
43 85.47 humidity 70 10 > th dose dependent rect. 6 12
51 85.60 humidity 80 90 < th dose independent sin 2 NA
53 85.61 temperature 20 270 > th dose independent rect. 2 6
61 85.75 humidity 90 10 < th dose dependent rect. 24 17
70 85.90 humidity 90 90 < th dose dependent rect. 24 17
72 85.91 radiation 20 30 < th dose dependent rect. 6 14
81 86.00 radiation 10 30 > th dose independent rect. 9 9
99 86.05 humidity 90 10 < th dose dependent rect. 22 20
120 86.34 humidity 90 10 < th dose dependent rect. 9 9
121 86.36 humidity 90 10 < th dose dependent rect. 7 11
127 86.44 humidity 80 10 > th dose independent sin 0 NA
138 86.52 humidity 80 270 > th dose independent rect. 2 16
143 86.56 radiation 10 10 > th dose independent rect. 9 23
148 86.61 humidity 90 10 < th dose dependent sin 1 NA
178 86.86 radiation 30 10 < th dose dependent rect. 12 21
186 86.91 humidity 80 10 > th dose independent rect. 3 17
193 86.96 radiation 10 10 < th dose dependent sin 22 NA
213 87.05 humidity 90 10 < th dose dependent rect. 5 12
282 87.36 humidity 70 10 > th dose dependent sin 23 NA
328 87.68 humidity 50 10 > th dose dependent rect. 12 21
351 87.80 temperature 20 270 > th dose independent rect. 3 16
353 87.80 radiation 20 30 < th dose dependent rect. 21 23
366 87.87 humidity 50 10 > th dose dependent sin 0 NA
378 87.91 radiation 20 10 < th dose dependent rect. 10 23
386 87.94 radiation 10 30 > th dose independent sin 22 NA
389 87.96 temperature 20 270 > th dose dependent rect. 3 5
434 88.14 radiation 20 90 < th dose independent rect. 13 20
437 88.14 radiation 20 30 < th dose dependent rect. 1 23
471 88.26 humidity 60 14400 > th dose independent rect. 21 9
480 88.30 humidity 70 270 > th dose dependent rect. 3 15
505 88.37 humidity 80 270 > th dose independent rect. 23 19
529 88.44 humidity 80 10 > th dose independent rect. 23 21
530 88.44 radiation 20 10 < th dose dependent rect. 3 23
536 88.46 humidity 50 10 > th dose dependent rect. 21 23
547 88.51 humidity 80 10 > th dose independent rect. 1 19
594 88.70 radiation 10 10 < th dose independent rect. 6 14
604 88.74 radiation 20 14400 < th dose independent rect. 21 9
632 88.83 humidity 50 10 > th dose dependent rect. 12 23
664 88.90 humidity 90 10 < th dose dependent rect. 9 21
671 88.93 humidity 90 10 < th dose dependent rect. 9 23
717 89.08 radiation 20 10 < th dose dependent no NA NA
731 89.13 radiation 20 10 < th dose dependent rect. 15 23
734 89.15 radiation 10 1440 < th dose independent rect. 21 8
812 89.34 humidity 90 10 < th dose dependent rect. 9 19
851 89.42 humidity 90 10 < th dose dependent rect. 7 23
928 89.60 radiation 20 10 < th dose dependent rect. 23 23
968 89.68 humidity 50 10 > th dose dependent rect. 1 23