BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0129300 Os05g0129300|AK065180
         (148 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62420.1  | chr3:23091844-23092284 REVERSE LENGTH=147           90   5e-19
AT1G75390.1  | chr1:28292224-28292745 FORWARD LENGTH=174           59   7e-10
AT4G34590.1  | chr4:16522449-16522928 FORWARD LENGTH=160           58   2e-09
AT2G18160.1  | chr2:7898288-7898803 REVERSE LENGTH=172             58   2e-09

>AT3G62420.1 | chr3:23091844-23092284 REVERSE LENGTH=147
          Length = 146

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 4/126 (3%)

Query: 22  ADERKRKRMLSNXXXXXXXXXXXXXXLEELIAEAARLQAENARVEAQIGAYAGELSKVDG 81
            DERKRKRM+SN              L +LI E   L+ +NA++  Q+   + +  +++ 
Sbjct: 22  TDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEMES 81

Query: 82  ENAVLRARHGELAGRLQALGSVLEIL-QVAGAPVDIPEIPDDPLLRPWQPPFAAQPIVAT 140
           +N VLRA+  EL  RL++L SVLE++ +++G  +DIPEIP+  +  PWQ P   QPI A+
Sbjct: 82  KNNVLRAQASELTDRLRSLNSVLEMVEEISGQALDIPEIPES-MQNPWQMPCPMQPIRAS 140

Query: 141 AMADAF 146
             AD F
Sbjct: 141 --ADMF 144



>AT1G75390.1 | chr1:28292224-28292745 FORWARD LENGTH=174
          Length = 173

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 23  DERKRKRMLSNXXXXXXXXXXXXXXLEELIAEAARLQAENARVEAQIGAYAGELSKVDGE 82
           DERKRKR  SN              L++L A+   L+ ENA++ A I         ++ E
Sbjct: 39  DERKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVAGIAVTTQHYVTIEAE 98

Query: 83  NAVLRARHGELAGRLQALGSVLEILQVAGAPVDIPE---IPD----DPLLRPWQPPFAAQ 135
           N +LRA+  EL  RLQ+L  +++ ++ + +   +     + D    D ++ P    F  Q
Sbjct: 99  NDILRAQVLELNHRLQSLNEIVDFVESSSSGFGMETGQGLFDGGLFDGVMNPMNLGFYNQ 158

Query: 136 PIVATA 141
           PI+A+A
Sbjct: 159 PIMASA 164



>AT4G34590.1 | chr4:16522449-16522928 FORWARD LENGTH=160
          Length = 159

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%)

Query: 23  DERKRKRMLSNXXXXXXXXXXXXXXLEELIAEAARLQAENARVEAQIGAYAGELSKVDGE 82
           ++RKRKRMLSN              L++L A+   L+ EN  +   +         V+ E
Sbjct: 25  EQRKRKRMLSNRESARRSRMKKQKLLDDLTAQVNHLKKENTEIVTSVSITTQHYLTVEAE 84

Query: 83  NAVLRARHGELAGRLQALGSVLEIL 107
           N+VLRA+  EL  RLQ+L  ++E L
Sbjct: 85  NSVLRAQLDELNHRLQSLNDIIEFL 109



>AT2G18160.1 | chr2:7898288-7898803 REVERSE LENGTH=172
          Length = 171

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%)

Query: 23  DERKRKRMLSNXXXXXXXXXXXXXXLEELIAEAARLQAENARVEAQIGAYAGELSKVDGE 82
           DERKRKRMLSN              +++L A+  +L  +N ++   +   +    K+  E
Sbjct: 29  DERKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQAE 88

Query: 83  NAVLRARHGELAGRLQALGSVLEILQVAGAPVDIPEIP 120
           N+VL A+  EL+ RLQ+L  +++++Q  GA   + +I 
Sbjct: 89  NSVLTAQMEELSTRLQSLNEIVDLVQSNGAGFGVDQID 126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,074,945
Number of extensions: 67194
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 4
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)