Os05g0126200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0126200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.36 | 0.368 | 10.9 | 0.369 | 1.07 | 0.933 | -0.174 | -1.08 | -0.0336 | 17.4 | 25.2 | 10 | -- | -- |
| 61.69 | 0.369 | 10.9 | 0.49 | 1.08 | 0.852 | -0.286 | -- | -0.00054 | 17.4 | 25.2 | 10 | -- | -- |
| 61.29 | 0.367 | 10.9 | 0.363 | 1.08 | 0.934 | -- | -1.19 | -0.0357 | 17.4 | 25.2 | 10 | -- | -- |
| 61.88 | 0.369 | 10.9 | 0.494 | 1.09 | 0.83 | -- | -- | -0.000143 | 17.4 | 25.2 | 10 | -- | -- |
| 98.63 | 0.463 | 10.9 | -0.0757 | -- | 1.79 | -- | -2.91 | -0.245 | -- | 24.2 | 148 | -- | -- |
| 72.14 | 0.398 | 10.9 | 0.616 | 1.35 | -- | 0.116 | -- | 0.0598 | 16.8 | -- | -- | -- | -- |
| 72.18 | 0.398 | 10.9 | 0.617 | 1.35 | -- | -- | -- | 0.0604 | 16.8 | -- | -- | -- | -- |
| 102.48 | 0.471 | 10.9 | 0.332 | -- | 1.58 | -- | -- | -0.113 | -- | 24.21 | 132 | -- | -- |
| 67.71 | 0.383 | 10.9 | -- | 1.04 | 0.935 | -- | -- | -0.127 | 17.5 | 23.23 | 13 | -- | -- |
| 168.3 | 0.606 | 10.9 | 0.567 | -- | -- | -- | -- | 0.0255 | -- | -- | -- | -- | -- |
| 82.21 | 0.424 | 10.9 | -- | 1.34 | -- | -- | -- | -0.00828 | 16.8 | -- | -- | -- | -- |
| 105.05 | 0.477 | 10.9 | -- | -- | 1.62 | -- | -- | -0.176 | -- | 24.1 | 130 | -- | -- |
| 176.77 | 0.621 | 10.9 | -- | -- | -- | -- | -- | -0.0374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 4 | 50.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 22 | 51.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 26 | 51.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 32 | 51.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 46 | 52.25 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 60 | 52.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 63 | 52.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 66 | 52.87 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 77 | 53.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 173 | 54.05 | temperature | 15 | 30 | > th | dose dependent | sin | 1 | NA |
| 191 | 54.12 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 393 | 55.20 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 421 | 55.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 790 | 57.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 807 | 57.28 | radiation | 10 | 270 | > th | dose independent | sin | 6 | NA |
| 953 | 57.77 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 21 |
| 988 | 57.96 | humidity | 80 | 90 | < th | dose independent | rect. | 8 | 6 |
| 989 | 57.97 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 997 | 58.01 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 5 |