BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0126200 Os05g0126200|AK059554
         (192 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51010.1  | chr3:18946880-18948048 REVERSE LENGTH=189          133   6e-32

>AT3G51010.1 | chr3:18946880-18948048 REVERSE LENGTH=189
          Length = 188

 Score =  133 bits (334), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 88/117 (75%)

Query: 72  GLMDTRFPKRRPGFKSRRKRASLRPKGPYYWVKCKPGEPIPANQPNEGSVQGRKEKKRIK 131
            L DTR PKRRP    +RKR+ L+P GPY +V+  PG+PI +N PNEGSV+ R  KKRI 
Sbjct: 67  SLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIG 126

Query: 132 QRKAFIMAEKKKRKAQYSAAVKRKEAERTERKMAAVARERAWTERLADLKRIEEEMK 188
           QR+AFI++EKKKR+A    A ++K  ++ ERKMAAVAR+RAW ERL +L+++EEE K
Sbjct: 127 QRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWAERLIELQQLEEEKK 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,915,261
Number of extensions: 109646
Number of successful extensions: 927
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)