Os05g0121000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1218 family protein.
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Os05g0121000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1218 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.86 | 0.23 | 11.9 | 0.443 | 0.323 | -1.34 | -0.289 | -0.571 | 0.243 | 0.232 | 23.68 | 947 | -- | -- |
| 24.23 | 0.229 | 11.9 | 0.365 | 0.328 | -1.25 | -0.189 | -- | 0.226 | 0.17 | 23.79 | 947 | -- | -- |
| 24.13 | 0.229 | 11.9 | 0.426 | 0.33 | -1.37 | -- | -0.486 | 0.247 | 0.0248 | 23.31 | 991 | -- | -- |
| 24.37 | 0.23 | 11.9 | 0.367 | 0.329 | -1.26 | -- | -- | 0.227 | 0.126 | 23.72 | 954 | -- | -- |
| 30.38 | 0.257 | 11.9 | 0.386 | -- | -1.39 | -- | -0.281 | 0.197 | -- | 24.78 | 892 | -- | -- |
| 45.45 | 0.316 | 11.9 | 0.714 | 0.465 | -- | -0.253 | -- | 0.457 | 0.05 | -- | -- | -- | -- |
| 45.73 | 0.317 | 11.9 | 0.724 | 0.466 | -- | -- | -- | 0.459 | 24 | -- | -- | -- | -- |
| 30.46 | 0.257 | 11.9 | 0.348 | -- | -1.35 | -- | -- | 0.186 | -- | 24.9 | 896 | -- | -- |
| 27.4 | 0.244 | 12 | -- | 0.332 | -1.47 | -- | -- | 0.17 | 23.9 | 23.44 | 1056 | -- | -- |
| 59.4 | 0.36 | 11.9 | 0.738 | -- | -- | -- | -- | 0.465 | -- | -- | -- | -- | -- |
| 59.54 | 0.361 | 11.9 | -- | 0.475 | -- | -- | -- | 0.378 | 0.0799 | -- | -- | -- | -- |
| 33.15 | 0.268 | 12 | -- | -- | -1.51 | -- | -- | 0.117 | -- | 24.86 | 909 | -- | -- |
| 73.78 | 0.401 | 11.9 | -- | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 2 | 25.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 7 | 25.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 10 | 25.13 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 14 | 25.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 22 | 25.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 31 | 25.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 34 | 25.26 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 39 | 25.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 42 | 25.30 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 44 | 25.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 62 | 25.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 64 | 25.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 70 | 25.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 78 | 25.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 121 | 25.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 133 | 25.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 135 | 25.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 153 | 25.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 184 | 25.61 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 199 | 25.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 211 | 25.63 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 257 | 25.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 274 | 25.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 328 | 25.75 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 378 | 25.80 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 407 | 25.83 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 642 | 26.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 651 | 26.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 11 |
| 708 | 26.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 726 | 26.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 921 | 26.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 958 | 26.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |