BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0121000 Os05g0121000|AK071341
         (194 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31130.1  | chr4:15137159-15138465 REVERSE LENGTH=196          156   7e-39

>AT4G31130.1 | chr4:15137159-15138465 REVERSE LENGTH=196
          Length = 195

 Score =  156 bits (394), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 99/171 (57%)

Query: 5   SAQRIALTVXXXXXXXXXXXVIAENKKPPYGTPIKGKDVVICKFPSDPTIAMGXXXXXXX 64
           S ++++L V           VIAENKKP  GTPI GK VVICK+PSDPT+A+G       
Sbjct: 4   SMKQMSLVVSALGVLSFVLGVIAENKKPASGTPISGKGVVICKYPSDPTVALGYLSAAFL 63

Query: 65  XXTTIVGHAAIFYPYKSKSVPRGALFRSASLSAFFVIAELVSALAFAMLLWATVTEGLHR 124
              T+ G+ ++F  YK KSVP   LF+S S S FF IA + S LA ++LLW T+TE LH 
Sbjct: 64  LACTVAGYKSLFISYKGKSVPNSVLFKSTSFSVFFNIALITSGLALSLLLWPTITEQLHL 123

Query: 125 SNNIHHDLDTQCPTAKTXXXXXXXXXXXXXXXXXXVCQMLALNARSDYLDE 175
           + N+H +L+T CPTAKT                  V  MLA NAR D+ DE
Sbjct: 124 TRNVHRNLETSCPTAKTGLLGGGAFVSLDSCLFWLVALMLADNAREDHFDE 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,145,194
Number of extensions: 85152
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)