Os05g0118800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0118800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.96 | 0.239 | 10.3 | -0.604 | 0.225 | 0.96 | 0.0248 | -2.51 | -0.314 | 20.9 | 11.72 | 1335 | -- | -- |
| 32.21 | 0.264 | 10.2 | -0.0941 | 0.141 | 0.941 | -0.0444 | -- | -0.192 | 20.9 | 6.094 | 2088 | -- | -- |
| 25.96 | 0.237 | 10.3 | -0.604 | 0.225 | 0.96 | -- | -2.51 | -0.314 | 20.9 | 11.68 | 1335 | -- | -- |
| 30.98 | 0.259 | 10.2 | -0.0484 | 0.0576 | 1.04 | -- | -- | -0.166 | 20.4 | 3.984 | 917 | -- | -- |
| 26.38 | 0.239 | 10.3 | -0.507 | -- | 1.1 | -- | -2.37 | -0.29 | -- | 9.625 | 877 | -- | -- |
| 45.9 | 0.318 | 10.2 | 0.236 | 0.246 | -- | 0.0199 | -- | 0.000101 | 22 | -- | -- | -- | -- |
| 45.9 | 0.317 | 10.2 | 0.235 | 0.245 | -- | -- | -- | 6.2e-05 | 22 | -- | -- | -- | -- |
| 31.08 | 0.26 | 10.2 | -0.0543 | -- | 1.08 | -- | -- | -0.171 | -- | 4.535 | 876 | -- | -- |
| 31.04 | 0.259 | 10.2 | -- | 0.0615 | 1.01 | -- | -- | -0.158 | 20.4 | 5.651 | 917 | -- | -- |
| 49.53 | 0.329 | 10.2 | 0.238 | -- | -- | -- | -- | 0.000216 | -- | -- | -- | -- | -- |
| 47.36 | 0.322 | 10.2 | -- | 0.246 | -- | -- | -- | -0.0261 | 22.1 | -- | -- | -- | -- |
| 31.15 | 0.26 | 10.2 | -- | -- | 1.05 | -- | -- | -0.162 | -- | 6.115 | 872 | -- | -- |
| 51.02 | 0.333 | 10.2 | -- | -- | -- | -- | -- | -0.0262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 2 | 24.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 102 | 25.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 116 | 25.78 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 117 | 25.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 123 | 25.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 145 | 25.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 147 | 25.83 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 155 | 25.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 199 | 25.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 264 | 25.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 305 | 25.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 357 | 26.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 390 | 26.02 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 391 | 26.02 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 451 | 26.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 501 | 26.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 529 | 26.08 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 551 | 26.09 | temperature | 15 | 720 | > th | dose dependent | sin | 22 | NA |
| 610 | 26.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 611 | 26.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 665 | 26.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |