BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0118800 Os05g0118800|AK120705
         (55 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25225.1  | chr4:12923086-12923256 REVERSE LENGTH=57            60   2e-10
AT2G35736.1  | chr2:15023084-15023254 REVERSE LENGTH=57            54   1e-08

>AT4G25225.1 | chr4:12923086-12923256 REVERSE LENGTH=57
          Length = 56

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 1  MGFLQNTFSVCVGIGCGIYIAQNYDVPNMKKLMRDWMGKAKEVEESYKKP 50
          MG ++++FS  +G  CGIYIAQ Y+VPN+KKL    +  AK+VEE Y+KP
Sbjct: 1  MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKP 50



>AT2G35736.1 | chr2:15023084-15023254 REVERSE LENGTH=57
          Length = 56

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 1  MGFLQNTFSVCVGIGCGIYIAQNYDVPNMKKLMRDWMGKAKEVEESYKKP 50
          MG  ++ FS   G   G+Y+AQNY+VPN++KL    +  AK VEE+Y+KP
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKP 50



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,345,178
Number of extensions: 40260
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 55
Length of database: 11,106,569
Length adjustment: 28
Effective length of query: 27
Effective length of database: 10,338,921
Effective search space: 279150867
Effective search space used: 279150867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)