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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0116600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : F-box associated type 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0269) R2 : 0.000637
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0305 (0.0566) R2dN8 : 0.000823 R2N8 : 0.000637
σ : 0.506
deviance : 117.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.65 0.496 3.15 0.0705 0.0529 -0.357 -0.639 0.292 -0.0282 3.97 1010 10 -- --
111.92 0.497 3.15 0.0514 0.0571 -0.365 -0.636 -- -0.0313 4.2 1010 9 -- --
112.78 0.498 3.15 0.0772 0.0587 -0.36 -- 0.269 -0.0249 5.86 1010 10 -- --
113.02 0.498 3.15 0.0584 0.0602 -0.368 -- -- -0.0278 5.79 1010 7 -- --
112.96 0.498 3.15 0.0797 -- -0.368 -- 0.274 -0.0235 -- 1010 9 -- --
115.97 0.505 3.15 0.0375 0.076 -- -0.695 -- -0.0311 4.61 -- -- -- --
117.08 0.507 3.15 0.0425 0.0927 -- -- -- -0.0273 7 -- -- -- --
113.2 0.498 3.15 0.0606 -- -0.376 -- -- -0.0264 -- 1010 8 -- --
113.11 0.498 3.15 -- 0.0613 -0.366 -- -- -0.0343 5.76 1010 8 -- --
117.53 0.507 3.15 0.0444 -- -- -- -- -0.0256 -- -- -- -- --
117.12 0.506 3.15 -- 0.0932 -- -- -- -0.032 6.97 -- -- -- --
113.3 0.497 3.15 -- -- -0.374 -- -- -0.0331 -- 1010 9 -- --
117.58 0.506 3.15 -- -- -- -- -- -0.0305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.25 radiation 10.0 10 > th dose independent rect. 6 1
27 103.25 radiation 10.0 10 > th dose dependent rect. 6 1
55 106.65 radiation 1.0 10 < th dose dependent rect. 18 1
56 106.67 humidity 60.0 10 > th dose independent rect. 18 1
58 107.56 temperature 30.0 30 > th dose independent rect. 18 1
73 107.61 wind 3.0 30 < th dose dependent rect. 6 1
75 107.76 atmosphere 1005.0 30 > th dose dependent rect. 6 1
76 108.08 temperature 15.0 30 > th dose independent rect. 7 23
78 108.24 radiation 1.0 30 < th dose independent rect. 18 1
98 108.83 humidity 80.0 30 > th dose dependent rect. 6 1
99 109.27 humidity 70.0 30 < th dose independent rect. 18 1
102 109.49 temperature 30.0 30 < th dose dependent rect. 6 1
103 109.56 temperature 25.0 10 > th dose independent rect. 4 3
104 109.70 atmosphere 1005.0 30 > th dose independent rect. 18 1
105 109.71 atmosphere 1010.0 10 < th dose independent sin 9 NA
106 109.71 atmosphere 1010.0 30 < th dose dependent rect. 18 1
107 109.75 temperature 15.0 30 > th dose independent rect. 5 23
112 109.83 temperature 25.0 30 > th dose dependent rect. 18 1
115 109.88 atmosphere 1010.0 10 < th dose independent rect. 19 23
118 109.96 humidity 90.0 30 < th dose dependent rect. 18 1
119 109.99 wind 3.0 30 < th dose independent rect. 6 1
120 110.00 wind 5.0 30 < th dose dependent rect. 18 1
138 110.40 temperature 20.0 30 > th dose independent rect. 6 1
144 110.45 wind 9.0 1440 < th dose independent rect. 7 1
145 110.45 temperature 10.0 1440 > th dose independent rect. 7 1
149 110.45 temperature 30.0 1440 < th dose independent rect. 7 1
153 110.45 humidity 50.0 1440 > th dose independent rect. 7 1
158 110.45 atmosphere 995.0 1440 > th dose independent rect. 7 1
159 110.45 atmosphere 1015.0 1440 < th dose independent rect. 7 1
160 110.45 temperature 10.0 1440 > th dose independent rect. 8 23
171 110.55 humidity 90.0 30 < th dose independent rect. 6 1
173 110.57 atmosphere 1005.0 30 > th dose independent rect. 6 1
174 110.59 humidity 80.0 30 > th dose independent rect. 6 1
176 110.61 wind 7.0 30 < th dose independent rect. 18 1
180 110.62 wind 1.0 30 > th dose independent rect. 18 1
181 110.62 temperature 10.0 30 > th dose independent rect. 18 1
184 110.62 atmosphere 1010.0 30 < th dose independent rect. 18 1
189 110.62 precipitation 0.1 30 < th dose independent rect. 18 1
190 110.62 temperature 10.0 30 > th dose independent rect. 19 23
191 110.62 precipitation 0.1 30 < th dose dependent rect. 18 1
192 110.63 atmosphere 995.0 30 > th dose independent rect. 18 1
199 110.67 temperature 10.0 30 > th dose independent rect. 6 1
201 110.67 temperature 30.0 30 < th dose independent rect. 6 1
202 110.67 humidity 50.0 30 > th dose independent rect. 6 1
205 110.67 atmosphere 995.0 30 > th dose independent rect. 6 1
207 110.67 atmosphere 1015.0 30 < th dose independent rect. 6 1
208 110.67 radiation 20.0 30 < th dose independent rect. 6 1
211 110.67 precipitation 0.1 30 < th dose independent rect. 6 1
213 110.67 precipitation 0.1 30 < th dose dependent rect. 6 1
214 110.69 wind 1.0 30 > th dose independent rect. 6 1
219 110.77 temperature 15.0 720 > th dose independent rect. 13 6
220 110.79 temperature 15.0 270 > th dose independent rect. 5 22
223 110.83 wind 3.0 30 < th dose independent rect. 18 1
225 110.85 wind 9.0 30 < th dose independent rect. 7 23
230 110.91 atmosphere 1005.0 90 > th dose dependent rect. 2 5
243 111.03 temperature 10.0 30 > th dose dependent rect. 6 1
245 111.04 temperature 15.0 1440 > th dose independent rect. 18 1
255 111.11 temperature 15.0 1440 > th dose independent rect. 7 12
256 111.11 wind 1.0 30 > th dose dependent rect. 18 1
259 111.15 temperature 15.0 270 > th dose independent rect. 14 11
260 111.15 temperature 15.0 270 > th dose independent rect. 21 13
261 111.15 atmosphere 995.0 30 > th dose dependent rect. 18 1
264 111.18 temperature 15.0 720 > th dose independent rect. 11 8
269 111.20 humidity 90.0 1440 > th dose dependent rect. 11 3
270 111.21 wind 9.0 30 < th dose independent rect. 19 23
271 111.21 radiation 10.0 10 < th dose dependent rect. 6 1
275 111.22 radiation 40.0 30 < th dose dependent rect. 6 1
298 111.28 temperature 15.0 720 > th dose independent rect. 7 17
299 111.29 temperature 20.0 30 > th dose dependent rect. 4 3
309 111.38 atmosphere 995.0 30 > th dose independent rect. 19 23
312 111.41 humidity 90.0 1440 > th dose dependent rect. 13 1
315 111.42 humidity 90.0 1440 > th dose independent rect. 11 3
316 111.42 temperature 15.0 1440 > th dose independent rect. 19 4
317 111.42 temperature 15.0 1440 > th dose independent rect. 7 15
340 111.45 temperature 15.0 90 > th dose independent rect. 7 20
345 111.46 atmosphere 1005.0 270 > th dose dependent rect. 2 2
373 111.52 precipitation 0.1 720 > th dose independent rect. 9 9
387 111.56 temperature 30.0 10 > th dose independent sin 11 NA
388 111.56 temperature 30.0 10 < th dose independent sin 11 NA
401 111.61 temperature 15.0 90 > th dose independent sin 9 NA
403 111.61 temperature 15.0 90 > th dose independent sin 17 NA
405 111.61 temperature 15.0 270 > th dose independent sin 21 NA
411 111.62 precipitation 0.1 720 > th dose independent rect. 14 2
413 111.62 precipitation 0.1 720 > th dose dependent rect. 14 2
421 111.63 temperature 15.0 270 > th dose independent rect. 14 23
445 111.68 atmosphere 1010.0 10 < th dose independent no NA NA
450 111.70 humidity 90.0 1440 < th dose independent rect. 11 3
453 111.71 temperature 15.0 1440 > th dose independent sin 20 NA
462 111.71 precipitation 0.1 720 > th dose dependent rect. 9 8
475 111.73 temperature 15.0 720 < th dose dependent rect. 14 12
478 111.73 temperature 15.0 720 < th dose dependent rect. 10 15
483 111.74 atmosphere 1010.0 10 < th dose independent rect. 19 12
485 111.74 atmosphere 1010.0 10 < th dose independent rect. 3 23
486 111.74 temperature 15.0 720 < th dose dependent rect. 18 8
493 111.75 precipitation 0.1 720 > th dose independent rect. 12 6
501 111.76 temperature 15.0 720 < th dose dependent sin 17 NA
508 111.78 temperature 15.0 720 < th dose independent rect. 13 13
509 111.78 temperature 15.0 720 < th dose independent rect. 11 14
525 111.79 temperature 20.0 720 < th dose dependent rect. 11 7
577 111.82 temperature 15.0 720 < th dose independent rect. 23 2
578 111.82 temperature 15.0 1440 > th dose independent rect. 11 4
606 111.84 temperature 15.0 90 > th dose independent no NA NA
608 111.84 temperature 15.0 90 < th dose independent sin 7 NA
656 111.84 temperature 15.0 90 < th dose independent no NA NA
658 111.84 temperature 15.0 1440 < th dose independent rect. 5 1
660 111.84 temperature 15.0 1440 < th dose independent rect. 9 1
663 111.84 atmosphere 1015.0 1440 > th dose independent rect. 1 1
779 111.84 temperature 15.0 720 < th dose independent rect. 17 9
800 111.84 temperature 15.0 270 < th dose independent rect. 24 10