Os05g0110600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rab5-interacting family protein.
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Os05g0110600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rab5-interacting family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.8 | 0.219 | 11.1 | -0.162 | 0.121 | 0.706 | -0.452 | -0.105 | 0.0528 | 3.74 | 21.4 | 1200 | -- | -- |
| 21.83 | 0.218 | 11.1 | -0.139 | 0.121 | 0.715 | -0.456 | -- | 0.0602 | 3.72 | 21.3 | 1200 | -- | -- |
| 22.24 | 0.22 | 11.1 | -0.165 | 0.127 | 0.702 | -- | -0.148 | 0.0537 | 2.15 | 21.4 | 1204 | -- | -- |
| 22.31 | 0.22 | 11.1 | -0.131 | 0.128 | 0.716 | -- | -- | 0.0612 | 1.99 | 21.3 | 1218 | -- | -- |
| 23.12 | 0.224 | 11.1 | -0.175 | -- | 0.711 | -- | -0.189 | 0.0505 | -- | 21.34 | 1142 | -- | -- |
| 37 | 0.285 | 11.1 | 0.144 | 0.188 | -- | -0.452 | -- | 0.257 | 2.68 | -- | -- | -- | -- |
| 37.58 | 0.287 | 11.1 | 0.156 | 0.189 | -- | -- | -- | 0.26 | 1.65 | -- | -- | -- | -- |
| 23.21 | 0.224 | 11.1 | -0.126 | -- | 0.724 | -- | -- | 0.0613 | -- | 21.33 | 1142 | -- | -- |
| 22.71 | 0.222 | 11.1 | -- | 0.129 | 0.688 | -- | -- | 0.0846 | 2.02 | 21.4 | 1204 | -- | -- |
| 39.75 | 0.295 | 11.1 | 0.163 | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
| 38.22 | 0.289 | 11.1 | -- | 0.191 | -- | -- | -- | 0.242 | 1.67 | -- | -- | -- | -- |
| 23.59 | 0.226 | 11.1 | -- | -- | 0.687 | -- | -- | 0.0838 | -- | 21.32 | 1142 | -- | -- |
| 40.45 | 0.297 | 11.1 | -- | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 2 | 20.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 16 | 21.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 17 | 21.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 34 | 21.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 35 | 21.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 59 | 21.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 95 | 21.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 119 | 21.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 122 | 21.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 139 | 21.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 164 | 21.96 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 167 | 21.96 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 191 | 21.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 219 | 22.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 242 | 22.04 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 333 | 22.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 394 | 22.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 419 | 22.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 430 | 22.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 456 | 22.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 465 | 22.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 503 | 22.32 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 615 | 22.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 660 | 22.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 684 | 22.52 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 687 | 22.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 709 | 22.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 710 | 22.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 736 | 22.57 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |