BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0110600 Os05g0110600|AK121048
         (127 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59410.1  | chr5:23959761-23960730 REVERSE LENGTH=131          178   6e-46
AT2G29020.1  | chr2:12469869-12471428 FORWARD LENGTH=134          142   3e-35

>AT5G59410.1 | chr5:23959761-23960730 REVERSE LENGTH=131
          Length = 130

 Score =  178 bits (452), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 105/130 (80%), Gaps = 3/130 (2%)

Query: 1   MRKTKPSKQSRAQAQQNGGAGH---SKLARYFDPEASWDKDQLLDAVHWIRQVLGLACGL 57
           M+++K +K ++ Q Q+N    H   SKLA+ FDP+ASWDKDQL D +HWIRQV+GL  GL
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLISGL 60

Query: 58  LWGAVPLVGAIWIALFVTISTGLVYWYYAYLLKIDEEDFGGHGALLQEGMFASFTLFLLS 117
           LWG++PLVG IWI LF+ IS+G+VY YYA +LK+DEEDFGGH ALLQEG+FAS TLFLL+
Sbjct: 61  LWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLFLLA 120

Query: 118 WTLIYSLVHF 127
           W L+YSL HF
Sbjct: 121 WILVYSLAHF 130



>AT2G29020.1 | chr2:12469869-12471428 FORWARD LENGTH=134
          Length = 133

 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 92/120 (76%)

Query: 8   KQSRAQAQQNGGAGHSKLARYFDPEASWDKDQLLDAVHWIRQVLGLACGLLWGAVPLVGA 67
           +Q      QN   G    A+ FD EASWDKDQL D +HWIRQV+GL CGLLWGA+PLVG 
Sbjct: 14  EQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLLCGLLWGAIPLVGG 73

Query: 68  IWIALFVTISTGLVYWYYAYLLKIDEEDFGGHGALLQEGMFASFTLFLLSWTLIYSLVHF 127
           IW+ LF+ IS+G+VY YYA +LKIDEEDFGGH ALLQ+G+FAS +LFLL+W L+YSL  F
Sbjct: 74  IWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLFLLAWILVYSLSSF 133



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,047,502
Number of extensions: 117349
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)