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Os05g0110500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA helicase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.93 (0.0181) R2 : 0.0277
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.137 (0.038) R2dN8 : 0.0357 R2N8 : 0.0277
σ : 0.34
deviance : 53.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.29 0.271 9.95 0.339 0.315 -0.261 -0.228 -0.101 0.0696 14.4 24.9 236 -- --
33.32 0.269 9.95 0.316 0.311 -0.27 -0.203 -- 0.0582 14.4 25 235 -- --
33.36 0.269 9.95 0.308 0.321 -0.254 -- -0.0292 0.0535 14.6 24.59 201 -- --
33.36 0.269 9.95 0.304 0.333 -0.25 -- -- 0.0547 14.7 24.6 201 -- --
37.67 0.286 9.97 0.25 -- -0.366 -- -0.0163 0.0132 -- 25.2 144 -- --
36.93 0.285 9.92 0.383 0.472 -- -0.129 -- 0.19 15.2 -- -- -- --
36.98 0.285 9.92 0.381 0.472 -- -- -- 0.189 15.2 -- -- -- --
37.53 0.285 9.96 0.262 -- -0.385 -- -- 0.0072 -- 25.14 171 -- --
35.68 0.278 9.97 -- 0.297 -0.293 -- -- 0.00508 14.5 24.66 216 -- --
49.63 0.329 9.93 0.361 -- -- -- -- 0.177 -- -- -- -- --
40.8 0.299 9.93 -- 0.464 -- -- -- 0.147 15.2 -- -- -- --
39.29 0.292 9.97 -- -- -0.404 -- -- -0.0175 -- 25.2 174 -- --
53.06 0.34 9.93 -- -- -- -- -- 0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.31 temperature 10.0 270 > th dose dependent rect. 19 16
18 28.64 temperature 10.0 270 > th dose dependent rect. 6 5
20 28.74 temperature 10.0 270 > th dose dependent rect. 7 3
27 28.87 temperature 10.0 90 > th dose dependent rect. 7 20
31 28.96 temperature 10.0 10 > th dose dependent rect. 9 18
33 28.98 temperature 30.0 270 < th dose dependent rect. 1 4
38 29.02 wind 1.0 270 > th dose independent rect. 11 19
41 29.06 temperature 15.0 10 > th dose dependent rect. 21 15
44 29.09 temperature 30.0 270 < th dose dependent rect. 23 7
45 29.10 wind 1.0 270 > th dose independent rect. 1 5
48 29.12 wind 9.0 270 < th dose dependent rect. 6 6
66 29.26 temperature 10.0 10 > th dose dependent rect. 7 21
70 29.30 wind 9.0 270 < th dose dependent rect. 6 19
72 29.32 wind 9.0 270 < th dose dependent rect. 7 3
77 29.37 wind 1.0 270 > th dose independent rect. 10 21
87 29.44 wind 5.0 270 < th dose independent rect. 1 5
107 29.53 atmosphere 995.0 270 > th dose dependent rect. 1 5
111 29.55 temperature 25.0 270 < th dose independent rect. 2 3
117 29.58 wind 1.0 270 > th dose independent rect. 3 1
121 29.60 wind 1.0 270 > th dose independent rect. 1 16
126 29.62 precipitation 0.1 270 < th dose independent rect. 1 5
127 29.62 precipitation 0.1 270 < th dose dependent rect. 1 5
132 29.64 wind 1.0 270 > th dose independent rect. 23 8
136 29.65 wind 5.0 270 < th dose independent rect. 2 3
140 29.67 temperature 25.0 270 > th dose independent rect. 18 17
142 29.68 wind 9.0 270 < th dose independent rect. 6 19
155 29.74 wind 7.0 270 < th dose independent rect. 6 6
158 29.75 precipitation 0.1 270 < th dose independent rect. 2 3
160 29.75 temperature 25.0 270 < th dose independent rect. 1 5
161 29.75 precipitation 0.1 270 < th dose dependent rect. 2 3
163 29.76 wind 1.0 270 > th dose independent rect. 2 3
164 29.76 temperature 10.0 270 > th dose dependent rect. 18 7
178 29.79 wind 5.0 90 < th dose independent rect. 8 19
184 29.81 temperature 10.0 10 > th dose dependent rect. 7 7
186 29.82 wind 9.0 270 < th dose independent rect. 5 21
192 29.83 humidity 50.0 270 > th dose independent rect. 6 5
198 29.84 temperature 10.0 270 > th dose independent rect. 1 5
201 29.84 humidity 50.0 270 > th dose independent rect. 1 5
204 29.84 atmosphere 995.0 270 > th dose independent rect. 1 5
205 29.84 atmosphere 1015.0 270 < th dose independent rect. 1 5
206 29.84 radiation 20.0 270 < th dose independent rect. 1 5
209 29.84 precipitation 0.1 270 < th dose independent rect. 6 5
210 29.84 temperature 10.0 270 > th dose independent rect. 6 19
211 29.84 precipitation 0.1 270 < th dose dependent rect. 6 5
219 29.86 temperature 10.0 270 > th dose independent rect. 6 5
220 29.86 atmosphere 995.0 270 > th dose independent rect. 6 5
221 29.86 atmosphere 1015.0 270 < th dose independent rect. 6 5
222 29.86 wind 5.0 270 < th dose independent rect. 6 19
223 29.86 temperature 10.0 270 > th dose independent rect. 11 19
224 29.86 precipitation 0.1 270 < th dose independent rect. 6 19
225 29.86 precipitation 0.1 270 < th dose dependent rect. 6 19
228 29.87 precipitation 0.1 270 < th dose independent rect. 11 19
230 29.87 radiation 40.0 270 < th dose dependent rect. 1 5
234 29.87 precipitation 0.1 270 < th dose dependent rect. 11 19
235 29.88 wind 5.0 270 < th dose independent rect. 7 3
284 29.97 radiation 1.0 270 < th dose dependent rect. 2 3
293 29.99 temperature 10.0 270 > th dose independent rect. 2 3
296 29.99 humidity 50.0 270 > th dose independent rect. 2 3
299 29.99 atmosphere 995.0 270 > th dose independent rect. 2 3
300 29.99 atmosphere 1010.0 270 < th dose independent rect. 2 3
302 29.99 radiation 20.0 270 < th dose independent rect. 2 3
306 29.99 temperature 10.0 270 > th dose independent rect. 5 21
313 30.00 radiation 30.0 270 < th dose dependent rect. 2 3
320 30.01 atmosphere 1000.0 10 > th dose dependent rect. 3 6
322 30.02 radiation 1.0 270 > th dose independent rect. 7 3
323 30.02 temperature 15.0 10 > th dose dependent rect. 9 3
328 30.03 temperature 15.0 270 > th dose independent rect. 7 3
329 30.03 radiation 1.0 270 < th dose independent rect. 2 3
336 30.04 precipitation 0.1 270 < th dose independent rect. 7 3
338 30.04 precipitation 0.1 270 < th dose dependent rect. 7 3
344 30.05 humidity 50.0 270 > th dose independent rect. 7 3
345 30.05 radiation 1.0 270 > th dose independent rect. 6 5
352 30.06 atmosphere 995.0 270 > th dose independent rect. 7 3
353 30.06 atmosphere 1015.0 270 < th dose independent rect. 7 3
356 30.06 temperature 10.0 270 > th dose independent rect. 10 21
357 30.06 precipitation 0.1 270 < th dose independent rect. 5 21
360 30.06 precipitation 0.1 270 < th dose dependent rect. 5 21
369 30.09 precipitation 0.1 270 < th dose independent rect. 10 21
374 30.09 precipitation 0.1 270 < th dose dependent rect. 10 21
391 30.13 precipitation 0.1 270 < th dose independent rect. 2 15
394 30.13 precipitation 0.1 270 < th dose dependent rect. 2 15
402 30.15 wind 5.0 10 < th dose independent rect. 3 6
403 30.15 wind 9.0 270 < th dose independent rect. 12 18
405 30.15 atmosphere 1015.0 270 < th dose dependent rect. 6 5
418 30.18 temperature 20.0 270 > th dose independent rect. 6 19
420 30.18 atmosphere 1015.0 270 < th dose dependent rect. 7 3
428 30.20 humidity 50.0 270 > th dose independent rect. 6 19
489 30.28 precipitation 0.1 10 < th dose independent rect. 3 6
492 30.28 precipitation 0.1 10 < th dose dependent rect. 3 6
500 30.29 temperature 20.0 270 > th dose independent rect. 18 7
511 30.30 wind 9.0 270 < th dose independent rect. 17 9
550 30.33 temperature 10.0 270 > th dose independent rect. 17 9
551 30.33 radiation 20.0 270 < th dose independent rect. 17 9
555 30.33 temperature 10.0 270 > th dose independent rect. 2 15
558 30.33 atmosphere 1015.0 270 < th dose independent rect. 2 15
559 30.33 atmosphere 995.0 270 > th dose independent rect. 12 18
583 30.36 precipitation 0.1 270 < th dose independent rect. 17 9
585 30.36 temperature 10.0 10 > th dose dependent rect. 9 5
589 30.36 precipitation 0.1 270 < th dose dependent rect. 17 9
602 30.38 atmosphere 995.0 270 > th dose independent rect. 6 19
634 30.41 wind 9.0 10 < th dose dependent rect. 3 6
654 30.43 humidity 50.0 270 > th dose independent rect. 17 9
656 30.43 wind 9.0 270 < th dose dependent rect. 2 3
659 30.43 radiation 40.0 270 < th dose dependent rect. 17 9
663 30.44 radiation 1.0 270 < th dose independent rect. 1 8
664 30.44 wind 9.0 10 < th dose independent rect. 9 18
667 30.44 temperature 25.0 90 > th dose dependent sin 7 NA
683 30.45 wind 9.0 270 < th dose independent rect. 10 21
692 30.46 atmosphere 1005.0 270 > th dose independent rect. 2 4
707 30.46 precipitation 0.1 10 < th dose independent rect. 9 18
716 30.46 precipitation 0.1 10 < th dose dependent rect. 9 18
771 30.49 wind 9.0 270 < th dose dependent rect. 1 5
836 30.54 atmosphere 995.0 270 > th dose independent rect. 17 9
864 30.55 temperature 10.0 10 > th dose independent rect. 3 6
866 30.55 temperature 30.0 10 < th dose independent rect. 3 6
867 30.55 humidity 50.0 10 > th dose independent rect. 3 6
869 30.55 atmosphere 995.0 10 > th dose independent rect. 3 6
870 30.55 atmosphere 1015.0 10 < th dose independent rect. 3 6
875 30.55 temperature 10.0 10 > th dose independent rect. 9 18
884 30.55 temperature 30.0 90 < th dose dependent rect. 3 15
891 30.56 radiation 10.0 270 < th dose independent rect. 23 8
922 30.58 radiation 1.0 270 < th dose independent rect. 1 17
928 30.58 radiation 30.0 270 < th dose dependent rect. 23 8
977 30.62 radiation 1.0 270 > th dose independent sin 5 NA
987 30.62 humidity 50.0 90 > th dose dependent rect. 18 9
995 30.64 radiation 1.0 270 < th dose independent sin 5 NA