Os05g0108000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA pseudouridine synthase B family protein.
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Os05g0108000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA pseudouridine synthase B family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.47 | 0.347 | 11.9 | -0.736 | 0.714 | 0.64 | -0.298 | -0.0994 | -0.573 | 0.206 | 25.5 | 342 | -- | -- |
| 54.49 | 0.344 | 11.9 | -0.708 | 0.715 | 0.634 | -0.29 | -- | -0.563 | 0.186 | 25.5 | 341 | -- | -- |
| 54.85 | 0.345 | 11.9 | -0.715 | 0.717 | 0.648 | -- | -0.0567 | -0.572 | 0.252 | 25.53 | 341 | -- | -- |
| 54.86 | 0.345 | 11.9 | -0.7 | 0.717 | 0.645 | -- | -- | -0.567 | 0.245 | 25.55 | 341 | -- | -- |
| 72.15 | 0.396 | 11.9 | -0.728 | -- | 0.908 | -- | 0.026 | -0.593 | -- | 25.7 | 744 | -- | -- |
| 71.41 | 0.396 | 11.9 | -0.535 | 0.79 | -- | -0.416 | -- | -0.294 | 21.9 | -- | -- | -- | -- |
| 72.08 | 0.398 | 11.9 | -0.519 | 0.793 | -- | -- | -- | -0.293 | 21.9 | -- | -- | -- | -- |
| 72.05 | 0.395 | 11.9 | -0.779 | -- | 0.92 | -- | -- | -0.606 | -- | 25.6 | 741 | -- | -- |
| 67.23 | 0.382 | 11.9 | -- | 0.704 | 0.56 | -- | -- | -0.451 | 23.9 | 25.51 | 340 | -- | -- |
| 109.7 | 0.489 | 11.8 | -0.51 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 79.18 | 0.416 | 11.9 | -- | 0.791 | -- | -- | -- | -0.235 | 21.8 | -- | -- | -- | -- |
| 87.34 | 0.435 | 11.9 | -- | -- | 0.787 | -- | -- | -0.483 | -- | 25.67 | 736 | -- | -- |
| 116.57 | 0.504 | 11.8 | -- | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.70 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 3 | 48.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 13 | 50.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 36 | 51.59 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 89 | 53.85 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 99 | 54.20 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 109 | 54.40 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 125 | 54.74 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 131 | 54.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 136 | 54.93 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 140 | 54.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 142 | 55.01 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 145 | 55.05 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 180 | 55.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 181 | 55.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 184 | 55.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 196 | 55.71 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 212 | 55.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 238 | 56.00 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 239 | 56.01 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 23 |
| 243 | 56.05 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 251 | 56.09 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 253 | 56.11 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 263 | 56.19 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 285 | 56.33 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 302 | 56.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 312 | 56.45 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 320 | 56.49 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 329 | 56.52 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 23 |
| 336 | 56.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 345 | 56.60 | temperature | 25.0 | 270 | > th | dose independent | no | NA | NA |
| 358 | 56.65 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 360 | 56.66 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 378 | 56.70 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 386 | 56.73 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 391 | 56.75 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 396 | 56.76 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 403 | 56.78 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 412 | 56.81 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 23 |
| 434 | 56.89 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 465 | 56.97 | temperature | 25.0 | 270 | < th | dose independent | no | NA | NA |
| 466 | 56.97 | temperature | 10.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 496 | 57.05 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 503 | 57.07 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 506 | 57.08 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 529 | 57.11 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 548 | 57.15 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 558 | 57.18 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 15 |
| 565 | 57.19 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 589 | 57.23 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 598 | 57.24 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 638 | 57.32 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 2 | 8 |
| 646 | 57.33 | temperature | 25.0 | 270 | < th | dose independent | rect. | 19 | 23 |
| 657 | 57.35 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 660 | 57.36 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 666 | 57.37 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 696 | 57.42 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 754 | 57.48 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 19 |
| 783 | 57.51 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 785 | 57.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 789 | 57.52 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 790 | 57.52 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 16 |
| 836 | 57.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 850 | 57.60 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 860 | 57.61 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 861 | 57.61 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 863 | 57.61 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 920 | 57.64 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 928 | 57.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 980 | 57.68 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 991 | 57.69 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 20 |
| 996 | 57.69 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 22 |