BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0108000 Os05g0108000|AK065542
         (488 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14460.1  | chr5:4660239-4662543 REVERSE LENGTH=541            509   e-144
AT3G57150.1  | chr3:21154255-21155952 REVERSE LENGTH=566           92   8e-19

>AT5G14460.1 | chr5:4660239-4662543 REVERSE LENGTH=541
          Length = 540

 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/423 (63%), Positives = 295/423 (69%), Gaps = 71/423 (16%)

Query: 108 FVELKPEVVDFPRLHAREEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVXX 167
           FVELKPEVV+F RLH REE LYF+D FA PWEKDKHY+M+Y+LEKKY+PDQ LD AF+  
Sbjct: 147 FVELKPEVVEFDRLHQREEELYFYDTFAYPWEKDKHYKMVYQLEKKYYPDQCLDKAFLQP 206

Query: 168 XXXXXXXXXXXKGLVFFDDDDNNKEAEVKKKKD-----GEDRGEV----LERKVED---- 214
                       G V    DD+ K   V+ KK      G  R EV    +E   ED    
Sbjct: 207 ------------GEVLKKSDDSGK---VRGKKKVVAALGGKRSEVKRIGMENCDEDDDKL 251

Query: 215 -----------------------------FFRSLKKGPGHGEANVMKAKKKEPPQVRHEA 245
                                        FF+ L K P             E        
Sbjct: 252 VFFDEVKEKEEKKKSEDDVVVVTEKKVEQFFKGLTKSPN------------EKGMASGGG 299

Query: 246 DEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCGKLRRLVNVQKVGHAGTLD 305
           D   +P L +R  ELPPRW+GP GTV+L++KPKGWTSFTVCGKLRRLV V+KVGHAGTLD
Sbjct: 300 D--GEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 357

Query: 306 PMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED 365
           PMATGLLIVCVGKATKVVDRYQGM+KGYSGVFRLGEATST DADSPVIQRE WEHIKD+D
Sbjct: 358 PMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDD 417

Query: 366 IRKVAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGETVELSPRRISIHQFDIERSLEDR 425
           I+K   SF GEIWQVPPMFSAIKVGGEKMY+KARRGETVELSPRRISI QFDIERSL+DR
Sbjct: 418 IKKALTSFLGEIWQVPPMFSAIKVGGEKMYEKARRGETVELSPRRISIFQFDIERSLDDR 477

Query: 426 QNLIFRVICSKGTYIRSLCADLGKALGSCAHLTALRRDSIGDFSVNDAWSFAELEEQITK 485
           QNLIFRVICSKGTYIRSLCADL KALGSCAHLTALRRDSIG++S NDAW F ELE  ITK
Sbjct: 478 QNLIFRVICSKGTYIRSLCADLAKALGSCAHLTALRRDSIGEYSANDAWEFNELEAAITK 537

Query: 486 GYL 488
            Y 
Sbjct: 538 NYF 540



>AT3G57150.1 | chr3:21154255-21155952 REVERSE LENGTH=566
          Length = 565

 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 97/208 (46%), Gaps = 46/208 (22%)

Query: 271 VVLIDKPKGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMV 330
           V+ +DKP   +S  V   ++R++ V+K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 82  VINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 141

Query: 331 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVA---ASFRGEIWQVPPMFSAI 387
           K Y  V RL  A                      D+ KVA    S  G ++Q PP+ SA+
Sbjct: 142 KEYVCVARLHSAVP--------------------DVAKVARALESLTGAVFQRPPLISAV 181

Query: 388 KVGGEKMYDKARRGETVELSPRRISIHQFDIERSLE---DRQNLIFRVICSKGTYIRSLC 444
           K                    R++ I      + LE   DR  ++F V C  GTYIR++C
Sbjct: 182 K--------------------RQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMC 221

Query: 445 ADLGKALGSCAHLTALRRDSIGDFSVND 472
             LG  LG   H+  LRR   G    N+
Sbjct: 222 VHLGLLLGVGGHMQELRRVRSGILGENN 249



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,630,599
Number of extensions: 408443
Number of successful extensions: 1263
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 2
Length of query: 488
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 386
Effective length of database: 8,310,137
Effective search space: 3207712882
Effective search space used: 3207712882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)