Os05g0105200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein Rab-1B.
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Os05g0105200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein Rab-1B.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.59 | 0.447 | 8.67 | -2.09 | 0.88 | 1.02 | 0.6 | -0.992 | -0.495 | 1.14 | 28.05 | 1172 | -- | -- |
| 90.7 | 0.444 | 8.65 | -1.9 | 0.882 | 0.914 | 0.604 | -- | -0.473 | 1.11 | 28.03 | 1177 | -- | -- |
| 92.02 | 0.447 | 8.67 | -2.05 | 0.876 | 0.994 | -- | -0.615 | -0.498 | 1.2 | 27.9 | 1171 | -- | -- |
| 92.06 | 0.447 | 8.65 | -1.92 | 0.877 | 0.93 | -- | -- | -0.474 | 1.2 | 28 | 1163 | -- | -- |
| 134.84 | 0.541 | 8.69 | -2.16 | -- | 1.37 | -- | -0.738 | -0.624 | -- | 25.87 | 1104 | -- | -- |
| 125.46 | 0.525 | 8.67 | -1.64 | 1.04 | -- | 0.812 | -- | -0.526 | 1.04 | -- | -- | -- | -- |
| 128.21 | 0.53 | 8.67 | -1.67 | 1.04 | -- | -- | -- | -0.531 | 1.1 | -- | -- | -- | -- |
| 135.01 | 0.541 | 8.68 | -2.01 | -- | 1.33 | -- | -- | -0.623 | -- | 25.36 | 1086 | -- | -- |
| 183.65 | 0.631 | 8.59 | -- | 0.914 | 0.606 | -- | -- | -0.208 | 1.19 | 30.31 | 1121 | -- | -- |
| 195.47 | 0.653 | 8.65 | -1.63 | -- | -- | -- | -- | -0.51 | -- | -- | -- | -- | -- |
| 201.37 | 0.664 | 8.63 | -- | 1.01 | -- | -- | -- | -0.345 | 1.03 | -- | -- | -- | -- |
| 232.59 | 0.71 | 8.59 | -- | -- | 0.865 | -- | -- | -0.257 | -- | 27.98 | 1109 | -- | -- |
| 265.25 | 0.76 | 8.61 | -- | -- | -- | -- | -- | -0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 30 | 90.30 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 31 | 90.39 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 44 | 90.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 51 | 90.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 55 | 90.81 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 59 | 90.96 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 62 | 91.27 | humidity | 70 | 270 | > th | dose independent | rect. | 16 | 9 |
| 76 | 91.75 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 83 | 91.93 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 106 | 92.18 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 110 | 92.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 114 | 92.25 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 117 | 92.29 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 124 | 92.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 130 | 92.57 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 131 | 92.58 | humidity | 50 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 134 | 92.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 136 | 92.67 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 138 | 92.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 142 | 92.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 143 | 92.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 148 | 92.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 174 | 93.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 178 | 93.06 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 8 |
| 185 | 93.13 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 10 |
| 187 | 93.14 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 202 | 93.15 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 210 | 93.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 225 | 93.35 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 234 | 93.42 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 304 | 93.50 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 403 | 93.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 405 | 93.51 | temperature | 30 | 1440 | > th | dose dependent | sin | 23 | NA |
| 452 | 93.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 475 | 93.68 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 507 | 93.77 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 15 |
| 535 | 93.85 | temperature | 30 | 1440 | > th | dose dependent | sin | 9 | NA |
| 545 | 93.89 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 590 | 93.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 627 | 94.06 | humidity | 50 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 631 | 94.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 633 | 94.10 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 636 | 94.11 | humidity | 90 | 30 | < th | dose dependent | rect. | 16 | 6 |
| 776 | 94.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 16 |
| 784 | 94.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 791 | 94.47 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 799 | 94.50 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 814 | 94.54 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 826 | 94.58 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 836 | 94.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 859 | 94.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 874 | 94.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 884 | 94.76 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 947 | 94.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 950 | 94.88 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 1 |