Os05g0104000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FH protein NFH1.
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Os05g0104000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FH protein NFH1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.9 | 0.717 | 3.67 | 1.49 | 1.67 | -1.15 | 2 | -3.15 | 0.352 | 18.9 | 25.62 | 2837 | -- | -- |
| 241.45 | 0.724 | 3.76 | 0.816 | 1.66 | -0.867 | 1.88 | -- | 0.241 | 18.9 | 35.4 | 2881 | -- | -- |
| 243.11 | 0.726 | 3.67 | 1.4 | 1.68 | -1.14 | -- | -2.91 | 0.344 | 18.9 | 25.7 | 2814 | -- | -- |
| 250.52 | 0.737 | 3.75 | 0.783 | 1.67 | -0.868 | -- | -- | 0.245 | 18.8 | 38.22 | 2848 | -- | -- |
| 370.09 | 0.896 | 3.64 | 1.43 | -- | -1.25 | -- | -3.24 | 0.339 | -- | 32 | 2038 | -- | -- |
| 256.57 | 0.751 | 3.72 | 1.18 | 1.64 | -- | 1.88 | -- | 0.419 | 19 | -- | -- | -- | -- |
| 265.78 | 0.763 | 3.71 | 1.14 | 1.64 | -- | -- | -- | 0.424 | 19 | -- | -- | -- | -- |
| 323.48 | 0.838 | 3.75 | 0.589 | -- | -2.35 | -- | -- | 0.0567 | -- | 52.27 | 485 | -- | -- |
| 262.89 | 0.755 | 3.78 | -- | 1.65 | -1.26 | -- | -- | 0.114 | 18.8 | 47.18 | 3998 | -- | -- |
| 407.87 | 0.944 | 3.68 | 1.11 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 300.04 | 0.81 | 3.74 | -- | 1.63 | -- | -- | -- | 0.297 | 19 | -- | -- | -- | -- |
| 331.87 | 0.848 | 3.77 | -- | -- | -2.56 | -- | -- | -0.0338 | -- | 62.44 | 498 | -- | -- |
| 440.17 | 0.979 | 3.7 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 229.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 11 | 230.48 | temperature | 25 | 720 | < th | dose independent | sin | 4 | NA |
| 15 | 230.62 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 13 |
| 19 | 230.70 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 24 | 230.78 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 12 |
| 31 | 230.93 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 16 |
| 54 | 231.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 56 | 231.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 64 | 231.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 72 | 231.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 80 | 231.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 116 | 231.89 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 8 |
| 217 | 232.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 226 | 232.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 301 | 232.43 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 543 | 232.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 627 | 233.10 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 651 | 233.15 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 684 | 233.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 685 | 233.20 | temperature | 25 | 1440 | < th | dose independent | sin | 11 | NA |
| 771 | 233.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 772 | 233.34 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |
| 963 | 233.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 9 |